# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Nov  5 12:57:44 2022
# ------------------------------------------------

package:
  name: bioconductor-aldex2
  version: 1.30.0
source:
  md5: 176a430e5a6cf5da2530c59ee4f69fbf
  url:
    - https://bioarchive.galaxyproject.org/ALDEx2_1.30.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/ALDEx2_1.30.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-aldex2/bioconductor-aldex2_1.30.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 2.0.0 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.39 h6ceecb4_0
    - bioconductor-biobase 2.58.0 r42hc0cfd56_0
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-biocparallel 1.32.0 r42hc247a5b_0
    - bioconductor-data-packages 20221104 hdfd78af_2
    - bioconductor-delayedarray 0.24.0 r42hc0cfd56_0
    - bioconductor-genomeinfodb 1.34.1 r42hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0
    - bioconductor-genomicranges 1.50.0 r42hc0cfd56_0
    - bioconductor-iranges 2.32.0 r42hc0cfd56_0
    - bioconductor-matrixgenerics 1.10.0 r42hdfd78af_0
    - bioconductor-multtest 2.54.0 r42hc0cfd56_0
    - bioconductor-s4vectors 0.36.0 r42hc0cfd56_0
    - bioconductor-summarizedexperiment 1.28.0 r42hdfd78af_0
    - bioconductor-xvector 0.38.0 r42hc0cfd56_0
    - bioconductor-zlibbioc 1.44.0 r42hc0cfd56_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.24 ha878542_0
    - cairo 1.16.0 ha61ee94_1014
    - curl 7.86.0 h2283fc2_1
    - expat 2.5.0 h27087fc_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.1 hc2a2eb6_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_0
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 12.2.0 h55be85b_19
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - harfbuzz 5.3.0 h418a68e_0
    - icu 70.1 h27087fc_0
    - importlib-metadata 4.11.4 py310hff52083_0
    - importlib_metadata 4.11.4 hd8ed1ab_0
    - jpeg 9e h166bdaf_2
    - jq 1.6 h36c2ea0_1000
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.39 hc81fddc_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 16_linux64_openblas
    - libcblas 3.9.0 16_linux64_openblas
    - libcurl 7.86.0 h2283fc2_1
    - libdeflate 1.14 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libglib 2.74.1 h7a41b64_0
    - libgomp 12.2.0 h65d4601_19
    - libiconv 1.17 h166bdaf_0
    - liblapack 3.9.0 16_linux64_openblas
    - libnghttp2 1.47.0 hff17c54_1
    - libnsl 2.0.0 h7f98852_0
    - libopenblas 0.3.21 pthreads_h78a6416_3
    - libpng 1.6.38 h753d276_0
    - libsanitizer 12.2.0 h46fd767_19
    - libsqlite 3.39.4 h753d276_0
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libtiff 4.4.0 h55922b4_4
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.4 h166bdaf_0
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.10.3 h7463322_0
    - libzlib 1.2.13 h166bdaf_4
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - oniguruma 6.9.8 h166bdaf_0
    - openssl 3.0.7 h166bdaf_0
    - pango 1.50.11 h382ae3d_0
    - pcre2 10.37 hc3806b6_1
    - pip 22.3 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.10.6 ha86cf86_0_cpython
    - python_abi 3.10 2_cp310
    - pyyaml 6.0 py310h5764c6d_5
    - r-base 4.2.2 h15a6132_0
    - r-bh 1.78.0_0 r42hc72bb7e_1
    - r-bitops 1.0_7 r42h06615bd_1
    - r-codetools 0.2_18 r42hc72bb7e_1
    - r-cpp11 0.4.3 r42hc72bb7e_0
    - r-formatr 1.12 r42hc72bb7e_1
    - r-futile.logger 1.4.3 r42hc72bb7e_1004
    - r-futile.options 1.0.1 r42hc72bb7e_1003
    - r-lambda.r 1.2.4 r42hc72bb7e_2
    - r-lattice 0.20_45 r42h06615bd_1
    - r-mass 7.3_58.1 r42h06615bd_1
    - r-matrix 1.5_1 r42h5f7b363_0
    - r-matrixstats 0.62.0 r42h06615bd_1
    - r-nada 1.6_1.1 r42hc72bb7e_2
    - r-rcpp 1.0.9 r42h7525677_2
    - r-rcpparmadillo 0.11.4.0.1 r42h9f5de39_0
    - r-rcppgsl 0.3.12 r42h37cf8d7_0
    - r-rcppziggurat 0.1.6 r42h37cf8d7_2
    - r-rcurl 1.98_1.9 r42h06615bd_1
    - r-rfast 2.0.6 r42h9f5de39_1
    - r-snow 0.4_4 r42hc72bb7e_1
    - r-survival 3.4_0 r42h06615bd_1
    - r-truncnorm 1.0_8 r42h06615bd_1003
    - r-zcompositions 1.4.0_1 r42hc72bb7e_1
    - readline 8.1.2 h0f457ee_0
    - sed 4.8 he412f7d_0
    - setuptools 65.5.1 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tzdata 2022f h191b570_0
    - wheel 0.38.1 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 2.13.0 pyhd8ed1ab_0
    - zipp 3.10.0 pyhd8ed1ab_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h6239696_4
  run:
    - bioconductor-biocparallel >=1.32.0,<1.33.0
    - bioconductor-genomicranges >=1.50.0,<1.51.0
    - bioconductor-iranges >=2.32.0,<2.33.0
    - bioconductor-multtest >=2.54.0,<2.55.0
    - bioconductor-s4vectors >=0.36.0,<0.37.0
    - bioconductor-summarizedexperiment >=1.28.0,<1.29.0
    - r-base >=4.2,<4.3.0a0
    - r-rfast
    - r-zcompositions
test:
  commands:
    - $R -e "library('ALDEx2')"
about:
  description: A differential abundance analysis for the comparison of two or more
    conditions. Useful for analyzing data from standard RNA-seq or meta-RNA-seq assays
    as well as selected and unselected values from in-vitro sequence selections. Uses
    a Dirichlet-multinomial model to infer abundance from counts, optimized for three
    or more experimental replicates. The method infers biological and sampling variation
    to calculate the expected false discovery rate, given the variation, based on
    a Wilcoxon Rank Sum test and Welch's t-test (via aldex.ttest), a Kruskal-Wallis
    test (via aldex.kw), a generalized linear model (via aldex.glm), or a correlation
    test (via aldex.corr). All tests report p-values and Benjamini-Hochberg corrected
    p-values. ALDEx2 also calculates expected standardized effect sizes for paired
    or unpaired study designs.
  home: https://bioconductor.org/packages/3.16/bioc/html/ALDEx2.html
  license: GPL (>= 3)
  license_file: /opt/conda/conda-bld/bioconductor-aldex2_1667654042588/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/share/licenses/GPL-3
  summary: Analysis Of Differential Abundance Taking Sample Variation Into Account
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:aldex2
