# Differential cell-type-specific allelic imbalance

## Documentation for package ‘airpart’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

allelicRatio | Fit beta-binomial across cell types
cellQC | Quality control on cells
consensusPart | Consensus Partitions
estDisp | Estimate overdispersion parameter of a beta-binomial
extractResult | Extract results from an airpart analysis
featureQC | Quality control on features
fusedLasso | Generalized fused lasso to partition cell types by allelic imbalance
geneCluster | Gene clustering based on allelic ratio matrix with pseudo-count
makeForest | Plot allelic ratio result as forest
makeHeatmap | Plot allelic ratio as heatmap
makeOffByOneAdjMat | Generating adjancy matrix for neighboring cell states.
makeSimulatedData | Make simulated data for airpart
makeStep | Plot group partition and posterior allelic ratio estimates by step
makeViolin | Posterior mean allelic ratio estimates in violin plots
preprocess | Preprocess the SingleCellExperiment
summaryAllelicRatio | Allelic ratio summary
wilcoxExt | Extension on Pairwise Mann Whitney Wilcoxon Test for partitioning