<?xml version="1.0" standalone="no"?>
<!DOCTYPE MAGE-ML SYSTEM "MAGE-ML.dtd">
<MAGE-ML identifier="Affymetrix.com">
	<PropertySets_assnlist>
		<NameValueType name="FileVersion" value="1.0" type="string"/>
		<NameValueType name="CreatingUser" value="skaush" type="string"/>
		<NameValueType name="CreationDate" value="2005-07-18T18:27:24Z" type="date"/>
		<NameValueType name="SoftwareVersion" value="GCOS 1.3.0" type="string"/>
		<NameValueType name="MachineName" value="DJCV4V01" type="string"/>
		<NameValueType name="Comment" value="" type="string"/>
	</PropertySets_assnlist>
	<AuditAndSecurity_package>
		<Contact_assnlist>
			<Person identifier="DJCV4V01:Person:skaush" name="skaush"/>
		</Contact_assnlist>
	</AuditAndSecurity_package>
<Protocol_package>
	<Hardware_assnlist>
		<Hardware identifier="Affymetrix.com:Hardware:FluidicsStation">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix.com:Parameter:FluidicsStationNumber" name="Station Number">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:FluidicsStationPosition" name="Position">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:FluidicsStationID" name="Station ID">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:FluidicsStationStage" name="Station Stage">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="HardwareType" value="Fluidics Station"/>
			</Type_assn>
		</Hardware>
		<Hardware identifier="Affymetrix.com:Hardware:Scanner">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix.com:Parameter:ScannerID" name="Scanner ID">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScannerType" name="Scanner Type">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="HardwareType" value="Scanner"/>
			</Type_assn>
		</Hardware>
	</Hardware_assnlist>
	<Software_assnlist>
		<Software identifier="Affymetrix.com:Software:GeneChip">
			<Type_assn>
				<OntologyEntry category="SoftwareType" value="Acquisition and analysis software"/>
			</Type_assn>
		</Software>
	</Software_assnlist>
	<Protocol_assnlist>
		<Protocol identifier="Affymetrix.com:Protocol:Hybridization-NA" name="NA" title="Fluidics Station Protocol">
			<Type_assn>
				<OntologyEntry category="ProtocolType" value="Hybridization"/>
			</Type_assn>
			<Hardwares_assnreflist>
				<Hardware_ref identifier="Affymetrix.com:Hardware:FluidicsStation"/>
			</Hardwares_assnreflist>
			<Softwares_assnreflist>
				<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
			</Softwares_assnreflist>
		</Protocol>
		<Protocol identifier="Affymetrix.com:Protocol:Scan-M10" title="M10 Scan">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix.com:Parameter:Operator" name="Operator">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanDate" name="Scan Date">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanComments" name="Scan Comments">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScannerType" name="Scanner Type">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScannerID" name="Scanner ID">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanFilter" name="Scan Filter">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanTemperature" name="Scan Temperature">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanPixelSize" name="Scan Pixel Size">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanLineLength" name="Scan Line Length">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanNumberofLines" name="Scan # of Lines">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanHorizontalOffset" name="Scan Horizontal Offset">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanVerticalOffset" name="Scan Vertical Offset">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:NumberofScans" name="# of Scans">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanArcRadius" name="Scan ArcRadius">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:ScanOrientation" name="Scan Orientation">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:LaserSpotSize" name="Laser SpotSize">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:PMTGain" name="PMT Gain">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:AtlasARCType" name="AtlasARCType">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:AtlasPixelTime" name="AtlasPixelTime">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:VerifyGrid" name="Verify Grid">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:GridAlignFlag" name="Grid Align Flag">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:GridCoordinates" name="Grid Coordinates">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:AlgorithmName" name="Algorithm Name">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="ProtocolType" value="Scan"/>
			</Type_assn>
			<Hardwares_assnreflist>
				<Hardware_ref identifier="Affymetrix.com:Hardware:Scanner"/>
			</Hardwares_assnreflist>
			<Softwares_assnreflist>
				<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
			</Softwares_assnreflist>
		</Protocol>
		<Protocol identifier="Affymetrix.com:Protocol:FeatureExtraction" title="CEL Analysis">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix.com:Parameter:AlgorithmName" name="Algorithm Name">
					<DataType_assn>
						<OntologyEntry category="DataType" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:percentile" name="percentile">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:CellMargin" name="Cell Margin">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:CellFileVersion" name="Cell File Version">
					<DataType_assn>
						<OntologyEntry category="DataType" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:OutlierLow" name="OutlierLow">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix.com:Parameter:OutlierHigh" name="OutlierHigh">
					<DataType_assn>
						<OntologyEntry category="DataType" value="float"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="ProtocolType" value="CEL Analysis"/>
			</Type_assn>
			<Softwares_assnreflist>
				<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
			</Softwares_assnreflist>
		</Protocol>
	</Protocol_assnlist>
</Protocol_package>
<BioMaterial_package>
	<BioMaterial_assnlist>
		<BioSource identifier="DJCV4V01:BioSource:Wash_Stain_Example" name="Wash_Stain_Example">
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:34:00Z" action="creation"/>
			</AuditTrail_assnlist>
			<Characteristics_assnlist>
				<OntologyEntry category="Affymetrix:Sample Project" value="DTT_1_1_Sample_data"/>
			</Characteristics_assnlist>
			<MaterialType_assn>
				<OntologyEntry category="MaterialType" value="Sample File"/>
			</MaterialType_assn>
			<SourceContact_assnreflist>
				<Person_ref identifier="DJCV4V01:Person:skaush"/>
			</SourceContact_assnreflist>
		</BioSource>
	</BioMaterial_assnlist>
</BioMaterial_package>
<ArrayDesign_package>
	<ArrayDesign_assnlist>
		<PhysicalArrayDesign identifier="Affymetrix.com:PhysicalArrayDesign:TrueTag_10K_A" name="TrueTag_10K_A"/>
	</ArrayDesign_assnlist>
</ArrayDesign_package>
<Array_package>
	<Array_assnlist>
		<Array identifier="Affymetrix.com:Array:Sample_2_4C_Scan">
			<ArrayDesign_assnref>
				<PhysicalArrayDesign_ref identifier="Affymetrix.com:PhysicalArrayDesign:TrueTag_10K_A"/>
			</ArrayDesign_assnref>
			<Information_assnref>
				<ArrayManufacture_ref identifier=""/>
			</Information_assnref>
		</Array>
	</Array_assnlist>
</Array_package>
<BioAssay_package>
	<Channel_assnlist>
		<Channel identifier="Affymetrix.com:Channel:655">
			<PropertySets_assnlist>
				<NameValueType name="Wavelength" value="655"/>
			</PropertySets_assnlist>
		</Channel>
		<Channel identifier="Affymetrix.com:Channel:705">
			<PropertySets_assnlist>
				<NameValueType name="Wavelength" value="705"/>
			</PropertySets_assnlist>
		</Channel>
		<Channel identifier="Affymetrix.com:Channel:605">
			<PropertySets_assnlist>
				<NameValueType name="Wavelength" value="605"/>
			</PropertySets_assnlist>
		</Channel>
		<Channel identifier="Affymetrix.com:Channel:565">
			<PropertySets_assnlist>
				<NameValueType name="Wavelength" value="565"/>
			</PropertySets_assnlist>
		</Channel>
	</Channel_assnlist>
	<BioAssay_assnlist>
		<PhysicalBioAssay identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_Scan:Hybridization" name="Sample_2_4C_Scan">
			<BioAssayCreation_assn>
				<Hybridization identifier="DJCV4V01:Hybridization:Sample_2_4C_Scan" name="NA">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-17T05:39:00Z">
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="0">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:FluidicsStationNumber"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="0">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:FluidicsStationPosition"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="0">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:FluidicsStationID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:FluidicsStationStage"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix.com:Hardware:FluidicsStation"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:Hybridization-NA"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Array_assnref>
						<Array_ref identifier="Affymetrix.com:Array:Sample_2_4C_Scan"/>
					</Array_assnref>
				</Hybridization>
			</BioAssayCreation_assn>
		</PhysicalBioAssay>
		<PhysicalBioAssay identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanA" name="Sample_2_4C_ScanA">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanA.DAT"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:43:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:43:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<PhysicalBioAssayData_assnlist>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanA:DAT" URI="Sample_2_4C_ScanA.DAT">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:43:00Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:43:00Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Channels_assnreflist>
						<Channel_ref identifier="Affymetrix.com:Channel:655"/>
					</Channels_assnreflist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="Affymetrix_DAT"/>
					</Format_assn>
				</Image>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanA:JPG" URI="Sample_2_4C_ScanA.JPG">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:43:30Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:43:31Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="JPEG"/>
					</Format_assn>
				</Image>
			</PhysicalBioAssayData_assnlist>
			<BioAssayTreatments_assnlist>
				<ImageAcquisition identifier="DJCV4V01:ImageAcquisition:Sample_2_4C_ScanA">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-17T05:43:28Z">
							<ParameterValues_assnlist>
								<ParameterValue value="skaush">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:Operator"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Jul 16 2005 10:43:28PM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanDate"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="SW_Ver=4.0;HW_Ver=;ScannerID=M10SIM;Pixellations=0.5074,0.7000,1.0900,1.5600,2.5000,;EmissionFilters=570,532,565,605,655,705,;AutoloaderInstalled=1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanComments"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10SIM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="655">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanFilter"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanTemperature"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanPixelSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanLineLength"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1118">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanNumberofLines"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanHorizontalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="100.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanVerticalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:NumberofScans"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanArcRadius"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="6">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanOrientation"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:LaserSpotSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:PMTGain"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasARCType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasPixelTime"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="128">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:VerifyGrid"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="255">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridAlignFlag"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="{(35,82),(1053,84),(33,1100),(1051,1102)}">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridCoordinates"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Checkerboard - 6.0.26">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="M10SIM">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="M10">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix.com:Hardware:Scanner"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:Scan-M10"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Target_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_Scan"/>
					</Target_assnref>
					<Images_assnreflist>
						<Image_ref identifier="DJCV4V01:Image:Sample_2_4C_ScanA:DAT"/>
					</Images_assnreflist>
				</ImageAcquisition>
			</BioAssayTreatments_assnlist>
		</PhysicalBioAssay>
		<PhysicalBioAssay identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanB" name="Sample_2_4C_ScanB">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanB.DAT"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:44:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:44:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<PhysicalBioAssayData_assnlist>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanB:DAT" URI="Sample_2_4C_ScanB.DAT">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:44:00Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:44:00Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Channels_assnreflist>
						<Channel_ref identifier="Affymetrix.com:Channel:705"/>
					</Channels_assnreflist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="Affymetrix_DAT"/>
					</Format_assn>
				</Image>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanB:JPG" URI="Sample_2_4C_ScanB.JPG">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:44:07Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:44:08Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="JPEG"/>
					</Format_assn>
				</Image>
			</PhysicalBioAssayData_assnlist>
			<BioAssayTreatments_assnlist>
				<ImageAcquisition identifier="DJCV4V01:ImageAcquisition:Sample_2_4C_ScanB">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-17T05:44:05Z">
							<ParameterValues_assnlist>
								<ParameterValue value="skaush">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:Operator"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Jul 16 2005 10:44:05PM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanDate"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="SW_Ver=4.0;HW_Ver=;ScannerID=M10SIM;Pixellations=0.5074,0.7000,1.0900,1.5600,2.5000,;EmissionFilters=570,532,565,605,655,705,;AutoloaderInstalled=1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanComments"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10SIM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="705">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanFilter"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanTemperature"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanPixelSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanLineLength"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1118">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanNumberofLines"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanHorizontalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="100.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanVerticalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:NumberofScans"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanArcRadius"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="6">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanOrientation"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:LaserSpotSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:PMTGain"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasARCType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasPixelTime"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="128">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:VerifyGrid"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="255">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridAlignFlag"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="{(35,82),(1053,84),(33,1100),(1051,1102)}">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridCoordinates"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Checkerboard - 6.0.26">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="M10SIM">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="M10">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix.com:Hardware:Scanner"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:Scan-M10"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Target_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_Scan"/>
					</Target_assnref>
					<Images_assnreflist>
						<Image_ref identifier="DJCV4V01:Image:Sample_2_4C_ScanB:DAT"/>
					</Images_assnreflist>
				</ImageAcquisition>
			</BioAssayTreatments_assnlist>
		</PhysicalBioAssay>
		<PhysicalBioAssay identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanC" name="Sample_2_4C_ScanC">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanC.DAT"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:44:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:44:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<PhysicalBioAssayData_assnlist>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanC:DAT" URI="Sample_2_4C_ScanC.DAT">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:44:00Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:44:00Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Channels_assnreflist>
						<Channel_ref identifier="Affymetrix.com:Channel:605"/>
					</Channels_assnreflist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="Affymetrix_DAT"/>
					</Format_assn>
				</Image>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanC:JPG" URI="Sample_2_4C_ScanC.JPG">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:44:45Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:44:45Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="JPEG"/>
					</Format_assn>
				</Image>
			</PhysicalBioAssayData_assnlist>
			<BioAssayTreatments_assnlist>
				<ImageAcquisition identifier="DJCV4V01:ImageAcquisition:Sample_2_4C_ScanC">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-17T05:44:43Z">
							<ParameterValues_assnlist>
								<ParameterValue value="skaush">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:Operator"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Jul 16 2005 10:44:43PM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanDate"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="SW_Ver=4.0;HW_Ver=;ScannerID=M10SIM;Pixellations=0.5074,0.7000,1.0900,1.5600,2.5000,;EmissionFilters=570,532,565,605,655,705,;AutoloaderInstalled=1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanComments"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10SIM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="605">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanFilter"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanTemperature"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanPixelSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanLineLength"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1118">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanNumberofLines"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanHorizontalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="100.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanVerticalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:NumberofScans"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanArcRadius"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="6">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanOrientation"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:LaserSpotSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:PMTGain"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasARCType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasPixelTime"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="128">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:VerifyGrid"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="255">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridAlignFlag"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="{(35,82),(1053,84),(33,1100),(1051,1102)}">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridCoordinates"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Checkerboard - 6.0.26">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="M10SIM">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="M10">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix.com:Hardware:Scanner"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:Scan-M10"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Target_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_Scan"/>
					</Target_assnref>
					<Images_assnreflist>
						<Image_ref identifier="DJCV4V01:Image:Sample_2_4C_ScanC:DAT"/>
					</Images_assnreflist>
				</ImageAcquisition>
			</BioAssayTreatments_assnlist>
		</PhysicalBioAssay>
		<PhysicalBioAssay identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanD" name="Sample_2_4C_ScanD">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanD.DAT"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:45:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:45:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<PhysicalBioAssayData_assnlist>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanD:DAT" URI="Sample_2_4C_ScanD.DAT">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:45:00Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:45:00Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Channels_assnreflist>
						<Channel_ref identifier="Affymetrix.com:Channel:565"/>
					</Channels_assnreflist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="Affymetrix_DAT"/>
					</Format_assn>
				</Image>
				<Image identifier="DJCV4V01:Image:Sample_2_4C_ScanD:JPG" URI="Sample_2_4C_ScanD.JPG">
					<AuditTrail_assnlist>
						<Audit date="2005-07-17T05:45:24Z" action="creation">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
						<Audit date="2005-07-17T05:45:25Z" action="modification">
							<Performer_assnref>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performer_assnref>
						</Audit>
					</AuditTrail_assnlist>
					<Format_assn>
						<OntologyEntry category="ImageFormat" value="JPEG"/>
					</Format_assn>
				</Image>
			</PhysicalBioAssayData_assnlist>
			<BioAssayTreatments_assnlist>
				<ImageAcquisition identifier="DJCV4V01:ImageAcquisition:Sample_2_4C_ScanD">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-17T05:45:23Z">
							<ParameterValues_assnlist>
								<ParameterValue value="skaush">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:Operator"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Jul 16 2005 10:45:23PM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanDate"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="SW_Ver=4.0;HW_Ver=;ScannerID=M10SIM;Pixellations=0.5074,0.7000,1.0900,1.5600,2.5000,;EmissionFilters=570,532,565,605,655,705,;AutoloaderInstalled=1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanComments"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="M10SIM">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="565">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanFilter"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanTemperature"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanPixelSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanLineLength"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1118">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanNumberofLines"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanHorizontalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="100.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanVerticalOffset"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:NumberofScans"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="0.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanArcRadius"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="6">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:ScanOrientation"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:LaserSpotSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2795.000000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:PMTGain"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasARCType"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value=" ">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AtlasPixelTime"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="128">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:VerifyGrid"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="255">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridAlignFlag"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="{(35,82),(1053,84),(33,1100),(1051,1102)}">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:GridCoordinates"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="Checkerboard - 6.0.26">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="M10SIM">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="M10">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix.com:Parameter:ScannerType"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix.com:Hardware:Scanner"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="DJCV4V01:Person:skaush"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:Scan-M10"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Target_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_Scan"/>
					</Target_assnref>
					<Images_assnreflist>
						<Image_ref identifier="DJCV4V01:Image:Sample_2_4C_ScanD:DAT"/>
					</Images_assnreflist>
				</ImageAcquisition>
			</BioAssayTreatments_assnlist>
		</PhysicalBioAssay>
		<MeasuredBioAssay identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanA" name="Sample_2_4C_ScanA">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanA.CEL"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:43:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:43:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<FeatureExtraction_assn>
				<FeatureExtraction identifier="Affymetrix.com:FeatureExtraction:FeatureExtraction">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-16">
							<ParameterValues_assnlist>
								<ParameterValue value="FeatureExtraction - 6.2.33">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="75">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:percentile"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellMargin"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellFileVersion"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.004000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierLow"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierHigh"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:FeatureExtraction"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<PhysicalBioAssaySource_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanA"/>
					</PhysicalBioAssaySource_assnref>
				</FeatureExtraction>
			</FeatureExtraction_assn>
			<MeasuredBioAssayData_assnreflist>
				<MeasuredBioAssayData_ref identifier="DJCV4V01:MeasuredBioAssayData:Sample_2_4C_ScanA"/>
			</MeasuredBioAssayData_assnreflist>
		</MeasuredBioAssay>
		<MeasuredBioAssay identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanB" name="Sample_2_4C_ScanB">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanB.CEL"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:44:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:44:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<FeatureExtraction_assn>
				<FeatureExtraction identifier="Affymetrix.com:FeatureExtraction:FeatureExtraction">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-16">
							<ParameterValues_assnlist>
								<ParameterValue value="FeatureExtraction - 6.2.33">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="75">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:percentile"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellMargin"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellFileVersion"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.004000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierLow"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierHigh"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:FeatureExtraction"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<PhysicalBioAssaySource_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanB"/>
					</PhysicalBioAssaySource_assnref>
				</FeatureExtraction>
			</FeatureExtraction_assn>
			<MeasuredBioAssayData_assnreflist>
				<MeasuredBioAssayData_ref identifier="DJCV4V01:MeasuredBioAssayData:Sample_2_4C_ScanB"/>
			</MeasuredBioAssayData_assnreflist>
		</MeasuredBioAssay>
		<MeasuredBioAssay identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanC" name="Sample_2_4C_ScanC">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanC.CEL"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:44:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:44:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<FeatureExtraction_assn>
				<FeatureExtraction identifier="Affymetrix.com:FeatureExtraction:FeatureExtraction">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-16">
							<ParameterValues_assnlist>
								<ParameterValue value="FeatureExtraction - 6.2.33">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="75">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:percentile"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellMargin"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellFileVersion"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.004000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierLow"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierHigh"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:FeatureExtraction"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<PhysicalBioAssaySource_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanC"/>
					</PhysicalBioAssaySource_assnref>
				</FeatureExtraction>
			</FeatureExtraction_assn>
			<MeasuredBioAssayData_assnreflist>
				<MeasuredBioAssayData_ref identifier="DJCV4V01:MeasuredBioAssayData:Sample_2_4C_ScanC"/>
			</MeasuredBioAssayData_assnreflist>
		</MeasuredBioAssay>
		<MeasuredBioAssay identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanD" name="Sample_2_4C_ScanD">
			<PropertySets_assnlist>
				<NameValueType name="ProbeArrayType" value="TrueTag_10K_A"/>
				<NameValueType name="Archived" value="0"/>
				<NameValueType name="ArchivePath" value="C:\GeneChip\Affy_Data\Data\Sample_2_4C_ScanD.CEL"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:45:00Z" action="creation">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
				<Audit date="2005-07-17T05:45:00Z" action="modification">
					<Performer_assnref>
						<Person_ref identifier="DJCV4V01:Person:skaush"/>
					</Performer_assnref>
				</Audit>
			</AuditTrail_assnlist>
			<FeatureExtraction_assn>
				<FeatureExtraction identifier="Affymetrix.com:FeatureExtraction:FeatureExtraction">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2005-07-16">
							<ParameterValues_assnlist>
								<ParameterValue value="FeatureExtraction - 6.2.33">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:AlgorithmName"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="75">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:percentile"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="2">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellMargin"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="3">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:CellFileVersion"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.004000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierLow"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1.500000">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix.com:Parameter:OutlierHigh"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix.com:Software:GeneChip"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix.com:Protocol:FeatureExtraction"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<PhysicalBioAssaySource_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanD"/>
					</PhysicalBioAssaySource_assnref>
				</FeatureExtraction>
			</FeatureExtraction_assn>
			<MeasuredBioAssayData_assnreflist>
				<MeasuredBioAssayData_ref identifier="DJCV4V01:MeasuredBioAssayData:Sample_2_4C_ScanD"/>
			</MeasuredBioAssayData_assnreflist>
		</MeasuredBioAssay>
	</BioAssay_assnlist>
</BioAssay_package>
<Experiment_package>
	<Experiment_assnlist>
		<Experiment identifier="DJCV4V01:Experiment:Sample_2_4C_Scan" name="Sample_2_4C_Scan">
			<PropertySets_assnlist>
				<NameValueType name="Assay Type" value="Universal" type="string"/>
				<NameValueType name="Probe Array Type" value="TrueTag_10K_A" type="string"/>
				<NameValueType name="Barcode" value="TrueTag_10K_A1" type="string"/>
				<NameValueType name="AutomationFlag" value="0" type="string"/>
			</PropertySets_assnlist>
			<AuditTrail_assnlist>
				<Audit date="2005-07-17T05:39:00Z" action="creation"/>
			</AuditTrail_assnlist>
			<Providers_assnreflist>
				<Person_ref identifier="DJCV4V01:Person:skaush"/>
			</Providers_assnreflist>
			<BioAssays_assnreflist>
				<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanA"/>
				<MeasuredBioAssay_ref identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanA"/>
				<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanB"/>
				<MeasuredBioAssay_ref identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanB"/>
				<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanC"/>
				<MeasuredBioAssay_ref identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanC"/>
				<PhysicalBioAssay_ref identifier="Affymetrix.com:PhysicalBioAssay:Sample_2_4C_ScanD"/>
				<MeasuredBioAssay_ref identifier="DJCV4V01:MeasuredBioAssay:Sample_2_4C_ScanD"/>
			</BioAssays_assnreflist>
			<ExperimentDesigns_assnlist>
				<ExperimentDesign/>
			</ExperimentDesigns_assnlist>
		</Experiment>
	</Experiment_assnlist>
</Experiment_package>
</MAGE-ML>
