# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Feb 22 03:16:19 2021
# ------------------------------------------------

package:
    name: bactopia
    version: 1.6.1
source:
    sha256: b683fa69852873621b440673a58df459939ef5b386a21db519971f28b279b62d
    url: https://github.com/bactopia/bactopia/archive/v1.6.1.tar.gz
build:
    noarch: generic
    number: '0'
    string: '0'
requirements:
    run:
        - ariba
        - beautifulsoup4
        - biopython
        - blast >=2.10.1
        - bowtie2 <2.4.0
        - cd-hit
        - conda
        - coreutils
        - executor
        - lxml
        - mash
        - ncbi-amrfinderplus
        - ncbi-genome-download
        - nextflow
        - pysam >=0.15.3
        - python >3.6
        - requests
        - sed
        - unzip
        - wget
test:
    commands:
        - bactopia --conda_help
        - bactopia --version
        - bactopia datasets --help
        - bactopia prepare
        - bactopia search
        - bactopia tools
about:
    dev_url: https://github.com/bactopia/bactopia/
    home: https://bactopia.github.io/
    license: MIT
    license_file: LICENSE
    summary: Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:bactopia
        - doi:10.1128/mSystems.00190-20
    recipe-maintainers:
        - rpetit3
