name: bactopia-assembly_qc
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - bcftools=1.11
  - blast=2.6.0
  - bzip2=1.0.8
  - c-ares=1.17.1
  - ca-certificates=2020.12.5
  - certifi=2020.12.5
  - checkm-genome=1.0.7
  - circos=0.69.8
  - coreutils=8.31
  - curl=7.71.1
  - cycler=0.10.0
  - dendropy=4.5.1
  - expat=2.2.9
  - fontconfig=2.13.1
  - freetype=2.10.4
  - gettext=0.19.8.1
  - giflib=5.2.1
  - glimmerhmm=3.0.4
  - gsl=2.6
  - htslib=1.11
  - icu=67.1
  - joblib=1.0.0
  - jpeg=9d
  - k8=0.2.5
  - kiwisolver=1.3.1
  - krb5=1.17.2
  - lcms2=2.11
  - libblas=3.9.0
  - libcblas=3.9.0
  - libcurl=7.71.1
  - libcxx=11.0.1
  - libdeflate=1.7
  - libedit=3.1.20191231
  - libev=4.33
  - libffi=3.3
  - libgd=2.2.5
  - libgfortran=5.0.0
  - libgfortran5=9.3.0
  - libiconv=1.16
  - liblapack=3.9.0
  - libnghttp2=1.41.0
  - libopenblas=0.3.12
  - libpng=1.6.37
  - libssh2=1.9.0
  - libtiff=4.2.0
  - libwebp=1.1.0
  - libwebp-base=1.1.0
  - libxml2=2.9.10
  - llvm-openmp=11.0.1
  - lz4-c=1.9.3
  - matplotlib=3.3.3
  - matplotlib-base=3.3.3
  - minimap2=2.17
  - ncurses=6.2
  - numpy=1.19.5
  - olefile=0.46
  - openjdk=11.0.8
  - openssl=1.1.1i
  - perl=5.26.2
  - perl-autoloader=5.74
  - perl-carp=1.38
  - perl-clone=0.42
  - perl-config-general=2.63
  - perl-digest-perl-md5=1.9
  - perl-dynaloader=1.25
  - perl-exporter=5.72
  - perl-exporter-tiny=1.002001
  - perl-extutils-makemaker=7.36
  - perl-font-ttf=1.06
  - perl-gd=2.71
  - perl-io-string=1.08
  - perl-list-moreutils=0.428
  - perl-list-moreutils-xs=0.428
  - perl-math-bezier=0.01
  - perl-math-round=0.07
  - perl-math-vecstat=0.08
  - perl-module-implementation=0.09
  - perl-module-runtime=0.016
  - perl-number-format=1.75
  - perl-params-validate=1.29
  - perl-pathtools=3.75
  - perl-readonly=2.05
  - perl-regexp-common=2017060201
  - perl-scalar-list-utils=1.52
  - perl-set-intspan=1.19
  - perl-statistics-basic=1.6611
  - perl-svg=2.84
  - perl-text-format=0.59
  - perl-threaded=5.26.0
  - perl-time-hires=1.9760
  - perl-try-tiny=0.30
  - perl-xml-parser=2.44_01
  - perl-xsloader=0.24
  - pigz=2.3.4
  - pillow=8.1.0
  - pip=20.3.3
  - pyparsing=2.4.7
  - pysam=0.11.2.2
  - python=3.6.12
  - python-dateutil=2.8.1
  - python_abi=3.6
  - quast=5.0.2
  - readline=8.0
  - samtools=1.11
  - scipy=1.5.3
  - screamingbackpack=0.2.333
  - sed=4.7
  - setuptools=49.6.0
  - simplejson=3.17.2
  - six=1.15.0
  - sqlite=3.34.0
  - tk=8.6.10
  - tornado=6.1
  - wheel=0.36.2
  - xz=5.2.5
  - zlib=1.2.11
  - zstd=1.4.8
prefix: /Users/rpetit/miniconda3/envs/bactopia-assembly_qc

