name: bactopia-assemble_genome
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - assembly-scan=0.3.0
  - blast=2.6.0
  - boost=1.70.0
  - boost-cpp=1.70.0
  - bowtie2=2.3.5.1
  - bwa=0.7.17
  - bzip2=1.0.8
  - c-ares=1.17.1
  - ca-certificates=2020.12.5
  - certifi=2020.12.5
  - coreutils=8.31
  - flash=1.2.11
  - freebayes=1.3.2
  - gettext=0.19.8.1
  - htslib=1.11
  - icu=67.1
  - kmc=3.1.0
  - krb5=1.17.2
  - libblas=3.9.0
  - libcblas=3.9.0
  - libcurl=7.71.1
  - libcxx=11.0.1
  - libdeflate=1.7
  - libedit=3.1.20191231
  - libev=4.33
  - libffi=3.3
  - libgcc=4.8.5
  - libgfortran=5.0.0
  - libgfortran5=9.3.0
  - libiconv=1.16
  - liblapack=3.9.0
  - libnghttp2=1.41.0
  - libopenblas=0.3.12
  - libssh2=1.9.0
  - lighter=1.1.2
  - llvm-openmp=11.0.1
  - lz4-c=1.9.3
  - megahit=1.2.9
  - miniasm=0.3_r179
  - ncurses=6.2
  - numpy=1.19.5
  - openjdk=11.0.8
  - openssl=1.1.1i
  - parallel=20201122
  - perl=5.26.2
  - perl-file-spec=3.48_01
  - perl-findbin=1.51
  - pigz=2.3.4
  - pilon=1.23
  - pip=20.3.3
  - python=3.7.9
  - python_abi=3.7
  - racon=1.4.20
  - readline=8.0
  - samclip=0.4.0
  - samtools=1.11
  - sed=4.7
  - seqtk=1.3
  - setuptools=49.6.0
  - shovill-se=1.1.0se
  - skesa=2.4.0
  - spades=3.14.1
  - sqlite=3.34.0
  - tbb=2020.2
  - tk=8.6.10
  - trimmomatic=0.39
  - unicycler=0.4.8
  - velvet=1.2.10
  - wheel=0.36.2
  - xz=5.2.5
  - zlib=1.2.11
  - zstd=1.4.8
prefix: /Users/rpetit/miniconda3/envs/bactopia-assemble_genome

