conda install -y -c conda-forge -c bioconda \
  ariba \
  beautifulsoup4 \
  biopython \
  blast \
  "bowtie2<2.4.0"  \
  cd-hit \
  conda \
  coreutils \
  executor \
  lxml \
  mash \
  ncbi-genome-download \
  nextflow \
  "pysam>=0.15.3" \
  "python>3.6" \
  requests  \
  sed \
  unzip \
  wget
