README.md
setup.py
AquilaSV.egg-info/PKG-INFO
AquilaSV.egg-info/SOURCES.txt
AquilaSV.egg-info/dependency_links.txt
AquilaSV.egg-info/entry_points.txt
AquilaSV.egg-info/not-zip-safe
AquilaSV.egg-info/requires.txt
AquilaSV.egg-info/top_level.txt
bin/AquilaSV_step1.py
bin/AquilaSV_step2.py
bin/AquilaSV_step3.py
bin/Assign_phase_block_v4.py
bin/Concatenate_contigs_all_v4_extend_for_HCbk.py
bin/Extract_DEL_allregions.py
bin/Extract_INS_allregions.py
bin/Extract_SNV_info_from_contigs_forcontiginfo_forall.py
bin/Extract_qname_from_phased_molecule_cut_phase_blocks_v3.py
bin/Molecule_phase_alg2_withProbModel_v3_MT2.py
bin/Read_fastqs_from_sortedbam_v2.py
bin/Reformat.py
bin/Run_all_chunks.py
bin/Run_extract_reads_for_smallchunks_all_lessmem.py
bin/Run_h5_all_multithreads.py
bin/Run_phase_alg_multithreads2.py
bin/Run_spades_final_MT_2_all_noec_deltemp.py
bin/SPAdes-3.13.0-Linux/bin/metaspades.py
bin/SPAdes-3.13.0-Linux/bin/plasmidspades.py
bin/SPAdes-3.13.0-Linux/bin/rnaspades.py
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bin/SPAdes-3.13.0-Linux/bin/truspades.py
bin/SPAdes-3.13.0-Linux/share/spades/GPLv2.txt
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bin/SPAdes-3.13.0-Linux/share/spades/README.md
bin/SPAdes-3.13.0-Linux/share/spades/VERSION
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bin/SPAdes-3.13.0-Linux/share/spades/truspades_manual.html
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bin/SPAdes-3.13.0-Linux/share/spades/configs/corrector/corrector.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/careful_mda_mode 2.info
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bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/config 2.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/config.info
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bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/construction.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/detail_info_printer 2.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/detail_info_printer.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/distance_estimation 2.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/distance_estimation.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/large_genome_mode 2.info
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bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/mda_mode 2.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/mda_mode.info
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bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/moleculo_mode 2.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/debruijn/moleculo_mode.info
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bin/SPAdes-3.13.0-Linux/share/spades/configs/hammer/config.info
bin/SPAdes-3.13.0-Linux/share/spades/configs/ionhammer/ionhammer 2.cfg
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bin/SPAdes-3.13.0-Linux/share/spades/joblib2/logger.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib2/memory.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib2/my_exceptions.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib2/numpy_pickle.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib2/testing.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/_compat.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/_memory_helpers.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/_multiprocessing_helpers.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/disk.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/parallel.py
bin/SPAdes-3.13.0-Linux/share/spades/joblib3/pool.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/cyaml.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/dumper.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/emitter.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/error.py
bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/error.pyc
bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/events.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml2/loader.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml3/emitter.py
bin/SPAdes-3.13.0-Linux/share/spades/pyyaml3/loader.py
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bin/SPAdes-3.13.0-Linux/share/spades/pyyaml3/tokens.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/corrector_logic.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/lucigen_nxmate.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/options_storage.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/spades_logic.py
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bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/support.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/support.pyc
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/common/SeqIO.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/common/alignment.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/common/alignment.pyc
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/common/sam_parser 2.py
bin/SPAdes-3.13.0-Linux/share/spades/spades_pipeline/common/sam_parser.pyc
bin/SPAdes-3.13.0-Linux/share/spades/test_dataset/ecoli_1K_1.fq.gz
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