#  https://tree.nathanfriend.io

sample
    run_metadata
        pipeline
        timestamp
        sample_description
            sample
            path
            hash
        pipeline_metadata
            stage
            host_system
            config
            software
            database_information
    summary
    qc_assessment
pipelines
    fastp
    confindr
    kraken2
        read_based
        contig_based
    shovill
    samstats
    mlst
    mash
    quast
    busco
    aquamis


# results in
.
├── sample
│   ├── run_metadata
│   │   ├── pipeline
│   │   ├── timestamp
│   │   ├── sample_description
│   │   │   ├── sample
│   │   │   ├── path
│   │   │   └── hash
│   │   └── pipeline_metadata
│   │       ├── stage
│   │       ├── host_system
│   │       ├── config
│   │       ├── software
│   │       └── database_information
│   ├── summary
│   └── qc_assessment
└── pipelines
    ├── fastp
    ├── confindr
    ├── kraken2
    │   ├── read_based
    │   └── contig_based
    ├── shovill
    ├── samstats
    ├── mlst
    ├── mash
    ├── quast
    ├── busco
    └── aquamis