# Contains rules for poorly defined clusters and/or clusters which are likely to
# match primary metabolism

# Cutoffs and neighbourhoods are given in kilobases

RULE saccharide
    CATEGORY saccharide
    DESCRIPTION Saccharide cluster definition from clusterfinder
    CUTOFF 20
    NEIGHBOURHOOD 10
    CONDITIONS minimum(2,[Alpha-amylase, Alpha-amylase_C, Bac_transf,
                          Capsule_synth, CBM_48, DegT_DnrJ_EryC1, dTDP_sugar_isom,
                          Epimerase_2, Glycos_transf_1, Glycos_transf_2,
                          Glycos_transf_4, Glyco_tran_28_C, Glyco_transf_28,
                          Glyco_transf_8, Glyco_transf_8C, Glyco_transf_9,
                          MannoseP_isomer, PIG-L, Poly_export, Polysacc_synt,
                          Polysacc_synt_2, RmlD_sub_bind, Wzy_C])

RULE fatty_acid
    CATEGORY other
    DESCRIPTION Fatty acid definition from clusterfinder
    CUTOFF 20
    NEIGHBOURHOOD 10
    CONDITIONS  bt1fas or ft1fas or t2fas or fabH

RULE halogenated
    CATEGORY other
    DESCRIPTION Halogenases are frequently involved in secondary metabolite biosynthesis
    CUTOFF 5
    NEIGHBOURHOOD 10
    CONDITIONS Trp_halogenase
