# Contains rules for poorly defined clusters and/or clusters which are likely to
# match primary metabolism

# Cutoffs and neighbourhoods are given in kilobases

RULE saccharide
    COMMENT from clusterfinder
    CUTOFF 20
    NEIGHBOURHOOD 10
    CONDITIONS minimum(2,[Alpha-amylase, Alpha-amylase_C, Bac_transf,
                          Capsule_synth, CBM_48, DegT_DnrJ_EryC1, dTDP_sugar_isom,
                          Epimerase_2, Glycos_transf_1, Glycos_transf_2,
                          Glycos_transf_4, Glyco_tran_28_C, Glyco_transf_28,
                          Glyco_transf_8, Glyco_transf_8C, Glyco_transf_9,
                          MannoseP_isomer, PIG-L, Poly_export, Polysacc_synt,
                          Polysacc_synt_2, RmlD_sub_bind, Wzy_C])

RULE fatty_acid
    COMMENT from clusterfinder
    CUTOFF 20
    NEIGHBOURHOOD 10
    CONDITIONS  bt1fas or ft1fas or t2fas or fabH

RULE halogenated
    COMMENT Halogenases are frequently involved in secondary metabolite biosynthesis
    CUTOFF 5
    NEIGHBOURHOOD 10
    CONDITIONS Trp_halogenase
