############################################################################################################
# AnnotSV 3.4.3                                                                                            #
#                                                                                                          #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking                             #
#                                                                                                          #
# Copyright (C) 2017-2024 Veronique Geoffroy (veronique.geoffroy@inserm.fr)                                #
#                                                                                                          #
# This is part of AnnotSV source code.                                                                     #
#                                                                                                          #
# This program is free software; you can redistribute it and/or                                            #
# modify it under the terms of the GNU General Public License                                              #
# as published by the Free Software Foundation; either version 3                                           #
# of the License, or (at your option) any later version.                                                   #
#                                                                                                          #
# This program is distributed in the hope that it will be useful,                                          #
# but WITHOUT ANY WARRANTY; without even the implied warranty of                                           #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the                                            #
# GNU General Public License for more details.                                                             #
#                                                                                                          #
# You should have received a copy of the GNU General Public License                                        #
# along with this program; If not, see <http://www.gnu.org/licenses/>.                                     #
############################################################################################################

proc showHelp {} {
    
    global g_AnnotSV
    
    if {[file exists $g_AnnotSV(installDir)/commandLineOptions.txt]} {
        puts [ContentFromFile $g_AnnotSV(installDir)/commandLineOptions.txt]
    } elseif {[file exists $g_AnnotSV(docDir)/commandLineOptions.txt]} {
        puts [ContentFromFile $g_AnnotSV(docDir)/commandLineOptions.txt]
    }
    
    return
}

