Makefile
bin/AnnotSV
bin/INSTALL_annotations.sh
bin/variantconvert
etc/AnnotSV/configfile
lib/python3.12/site-packages/__editable__.variantconvert-1.2.2.pth
lib/python3.12/site-packages/__editable___variantconvert_1_2_2_finder.py
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/INSTALLER
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/LICENSE
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/METADATA
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/RECORD
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/REQUESTED
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/WHEEL
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/direct_url.json
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/entry_points.txt
lib/python3.12/site-packages/variantconvert-1.2.2.dist-info/top_level.txt
share/bash/AnnotSV/searchForAFreePortNumber.bash
share/doc/AnnotSV/Example/commands.README
share/doc/AnnotSV/Example/test.bed
share/doc/AnnotSV/Example/test.vcf
share/doc/AnnotSV/Example/test_GRCh37.annotated.example.tsv
share/doc/AnnotSV/Example/test_GRCh37.annotated.example.vcf
share/doc/AnnotSV/License.txt
share/doc/AnnotSV/README.AnnotSV_3.1_Mouse.pdf
share/doc/AnnotSV/README.AnnotSV_3.3.6.pdf
share/doc/AnnotSV/README.AnnotSV_latest.pdf
share/doc/AnnotSV/changeLog.txt
share/doc/AnnotSV/commandLineOptions.txt
share/python3/variantconvert/Dockerfile
share/python3/variantconvert/LICENSE
share/python3/variantconvert/README.md
share/python3/variantconvert/__init__.py
share/python3/variantconvert/configs/GRCh37/annotsv3_from_bed.json
share/python3/variantconvert/configs/GRCh37/annotsv3_from_bed.local.json
share/python3/variantconvert/configs/GRCh37/annotsv3_from_vcf.json
share/python3/variantconvert/configs/GRCh38/annotsv3_from_bed.json
share/python3/variantconvert/configs/GRCh38/annotsv3_from_bed.local.json
share/python3/variantconvert/configs/GRCh38/annotsv3_from_vcf.json
share/python3/variantconvert/configs/hg19/annotsv3_from_bed.json
share/python3/variantconvert/configs/hg19/annotsv3_from_vcf.json
share/python3/variantconvert/configs/hs1/annotsv3_from_bed.json
share/python3/variantconvert/configs/hs1/annotsv3_from_vcf.json
share/python3/variantconvert/images/variantconvert_large.png
share/python3/variantconvert/images/variantconvert_small.png
share/python3/variantconvert/pipinstall.flag
share/python3/variantconvert/pyproject.toml
share/python3/variantconvert/setup.cfg
share/python3/variantconvert/setup.py
share/python3/variantconvert/tests/controls/annotsv3_from_bed.vcf
share/python3/variantconvert/tests/controls/arriba.vcf
share/python3/variantconvert/tests/controls/canoes_bed.vcf
share/python3/variantconvert/tests/controls/chromothripsis.vcf
share/python3/variantconvert/tests/controls/decon_annotsv_test.vcf
share/python3/variantconvert/tests/controls/decon_test.vcf
share/python3/variantconvert/tests/controls/multisample_annotsv3_from_bed.vcf
share/python3/variantconvert/tests/controls/star-fusion.vcf
share/python3/variantconvert/tests/controls/varank_test.vcf
share/python3/variantconvert/tests/data/DECON.Design_results_all.txt
share/python3/variantconvert/tests/data/DECON.results_all.AnnotSV.tsv
share/python3/variantconvert/tests/data/VCF_Coordinates_Conversion.tsv
share/python3/variantconvert/tests/data/annotsv_from_bed.tsv
share/python3/variantconvert/tests/data/arriba.fusions.tsv
share/python3/variantconvert/tests/data/canoes.bed
share/python3/variantconvert/tests/data/chromothripsis.bedpe
share/python3/variantconvert/tests/data/fam01_SAMPLE_VARANK_hg19_allVariants.rankingByGene.tsv
share/python3/variantconvert/tests/data/multisample_from_bed.annotated.tsv
share/python3/variantconvert/tests/data/star-fusion.fusion_predictions.tsv
share/python3/variantconvert/tests/test_config.py
share/python3/variantconvert/tests/test_main.py
share/python3/variantconvert/variantconvert.yml
share/python3/variantconvert/variantconvert/__init__.py
share/python3/variantconvert/variantconvert/__main__.py
share/python3/variantconvert/variantconvert/commons.py
share/python3/variantconvert/variantconvert/config.py
share/python3/variantconvert/variantconvert/converter_factory.py
share/python3/variantconvert/variantconvert/converters/__init__.py
share/python3/variantconvert/variantconvert/converters/abstract_converter.py
share/python3/variantconvert/variantconvert/converters/vcf_from_annotsv.py
share/python3/variantconvert/variantconvert/converters/vcf_from_bed.py
share/python3/variantconvert/variantconvert/converters/vcf_from_bedpe.py
share/python3/variantconvert/variantconvert/converters/vcf_from_breakpoints.py
share/python3/variantconvert/variantconvert/converters/vcf_from_tsv.py
share/python3/variantconvert/variantconvert/converters/vcf_from_varank.py
share/python3/variantconvert/variantconvert/helper_functions.py
share/python3/variantconvert/variantconvert/varank_batch.py
share/python3/variantconvert/variantconvert/variant.py
share/tcl8.6/AnnotSV/AnnotSV-benignsv.tcl
share/tcl8.6/AnnotSV/AnnotSV-candidategenes.tcl
share/tcl8.6/AnnotSV/AnnotSV-clingen.tcl
share/tcl8.6/AnnotSV/AnnotSV-config.tcl
share/tcl8.6/AnnotSV/AnnotSV-cosmic.tcl
share/tcl8.6/AnnotSV/AnnotSV-cytoband.tcl
share/tcl8.6/AnnotSV/AnnotSV-encodeblacklist.tcl
share/tcl8.6/AnnotSV/AnnotSV-exac.tcl
share/tcl8.6/AnnotSV/AnnotSV-exomiser.tcl
share/tcl8.6/AnnotSV/AnnotSV-extann.tcl
share/tcl8.6/AnnotSV/AnnotSV-filteredVCF.tcl
share/tcl8.6/AnnotSV/AnnotSV-gap.tcl
share/tcl8.6/AnnotSV/AnnotSV-gccontent.tcl
share/tcl8.6/AnnotSV/AnnotSV-gencc.tcl
share/tcl8.6/AnnotSV/AnnotSV-general.tcl
share/tcl8.6/AnnotSV/AnnotSV-genes.tcl
share/tcl8.6/AnnotSV/AnnotSV-haploinsufficiency.tcl
share/tcl8.6/AnnotSV/AnnotSV-help.tcl
share/tcl8.6/AnnotSV/AnnotSV-loeuf-pLI.tcl
share/tcl8.6/AnnotSV/AnnotSV-omim.tcl
share/tcl8.6/AnnotSV/AnnotSV-pathogenicsnvindel.tcl
share/tcl8.6/AnnotSV/AnnotSV-pathogenicsv.tcl
share/tcl8.6/AnnotSV/AnnotSV-ranking.tcl
share/tcl8.6/AnnotSV/AnnotSV-regulatoryelements.tcl
share/tcl8.6/AnnotSV/AnnotSV-repeat.tcl
share/tcl8.6/AnnotSV/AnnotSV-segdup.tcl
share/tcl8.6/AnnotSV/AnnotSV-tad.tcl
share/tcl8.6/AnnotSV/AnnotSV-userBED.tcl
share/tcl8.6/AnnotSV/AnnotSV-variantconvert.tcl
share/tcl8.6/AnnotSV/AnnotSV-vcf.tcl
share/tcl8.6/AnnotSV/AnnotSV-write.tcl
share/tcl8.6/AnnotSV/tcllib/csv/csv.tcl
share/tcl8.6/AnnotSV/tcllib/csv/pkgIndex.tcl
share/tcl8.6/AnnotSV/tcllib/http/autoproxy.tcl
share/tcl8.6/AnnotSV/tcllib/http/pkgIndex.tcl
share/tcl8.6/AnnotSV/tcllib/json/json.tcl
share/tcl8.6/AnnotSV/tcllib/json/json_tcl.tcl
share/tcl8.6/AnnotSV/tcllib/json/json_write.tcl
share/tcl8.6/AnnotSV/tcllib/json/jsonc.tcl
share/tcl8.6/AnnotSV/tcllib/json/pkgIndex.tcl
share/tcl8.6/AnnotSV/tcllib/tar/pkgIndex.tcl
share/tcl8.6/AnnotSV/tcllib/tar/tar.tcl
