##fileformat=VCFv4.3
##fileDate=23/01/2023
##source=canoes_bed
##InputFile=/home1/HUB/bin/variantconvert/current/tests/data/canoes.bed
##FILTER=<ID=PASS,Description="Passed filter">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DEL,Description="Deletion">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT positions">
##INFO=<ID=END,Number=1,Type=Integer,Description="Second breakpoint of the SV, for SVs given in a single record">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1,length=249250621,assembly=hg19>
##contig=<ID=2,length=243199373,assembly=hg19>
##contig=<ID=3,length=198022430,assembly=hg19>
##contig=<ID=4,length=191154276,assembly=hg19>
##contig=<ID=5,length=180915260,assembly=hg19>
##contig=<ID=6,length=171115067,assembly=hg19>
##contig=<ID=7,length=159138663,assembly=hg19>
##contig=<ID=8,length=146364022,assembly=hg19>
##contig=<ID=9,length=141213431,assembly=hg19>
##contig=<ID=10,length=135534747,assembly=hg19>
##contig=<ID=11,length=135006516,assembly=hg19>
##contig=<ID=12,length=133851895,assembly=hg19>
##contig=<ID=13,length=115169878,assembly=hg19>
##contig=<ID=14,length=107349540,assembly=hg19>
##contig=<ID=15,length=102531392,assembly=hg19>
##contig=<ID=16,length=90354753,assembly=hg19>
##contig=<ID=17,length=81195210,assembly=hg19>
##contig=<ID=18,length=78077248,assembly=hg19>
##contig=<ID=19,length=59128983,assembly=hg19>
##contig=<ID=20,length=63025520,assembly=hg19>
##contig=<ID=21,length=48129895,assembly=hg19>
##contig=<ID=22,length=51304566,assembly=hg19>
##contig=<ID=M,length=16571,assembly=hg19>
##contig=<ID=X,length=155270560,assembly=hg19>
##contig=<ID=Y,length=59373566,assembly=hg19>
##reference=file:///home1/DB/STARK/genomes/current/hg19.fa
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SGT000000
7	6012978	.	T	<DEL>	.	PASS	SVTYPE=DEL;SVLEN=5401;END=6018379	GT	0/1
14	68331430	.	t	<DUP>	.	PASS	SVTYPE=DUP;SVLEN=508;END=68331938	GT	0/1
