# STOCKHOLM 1.0

#=GS           GCA_000004655.2_ASM465v1_rm.out113 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out153 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out344 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out528 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out583 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out861 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out901 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1308 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1371 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1673 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1843 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2125 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2130 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2521 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3102 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3588 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3590 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3652 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3907 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4054 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4069 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4506 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4617 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4851 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4875 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4892 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4948 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5067 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5075 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5171 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5436 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5442 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5634 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5715 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5728 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6064 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6296 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6304 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6711 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6865 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6986 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7040 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out117 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out500 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out527 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out636 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out791 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out844 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1263 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1378 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1411 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1529 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1881 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2470 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2527 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2860 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2956 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3012 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3255 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3256 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3268 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3286 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3371 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3679 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3971 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4017 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4083 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4497 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4578 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4598 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4807 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4970 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4975 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5397 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5676 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5778 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5869 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5883 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6002 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6177 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6228 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6342 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6399 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6422 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6503 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6519 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out7052 DE    SINE

GCA_000004655.2_ASM465v1_rm.out113            ----------------AAGATCTTCTGGCTAGCTCTACAA-----GATGG
GCA_000004655.2_ASM465v1_rm.out153            -------GAAACGGTCAGGGTCTTCCGGCTGGCTCTGGTTGGCTA-----
GCA_000004655.2_ASM465v1_rm.out344            --------GAAACGCTAGGGTCTTCTAGCTAACTCCACTA-----GATGG
GCA_000004655.2_ASM465v1_rm.out528            -----GAAACGACTGAGGGTTCTTTCTGCTAGCTCTACAA-----GATGG
GCA_000004655.2_ASM465v1_rm.out583            ------GAAACGCGTAAGGGTCTTCCAGCTAGCTCTACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out861            --------GAAACGTCCAGGATCTTCGGCTAGCTTCACAA-----AGTGG
GCA_000004655.2_ASM465v1_rm.out901            ---------------------GAAACACTTAGGGTCTTCA-----GTTGG
GCA_000004655.2_ASM465v1_rm.out1308           -------GAAACACACAAGGTTTTCTGGTTAGCTCTATAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out1371           ------GAAACACTGAGGGATCTTCCGGTTAGCTACACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out1673           -----------------------------------TAGTTATAAAAAGCG
GCA_000004655.2_ASM465v1_rm.out1843           -------GAAACCCTAAGGGTCTTTCGGCTAGCTCTACAA-----GGTGA
GCA_000004655.2_ASM465v1_rm.out2125           ------GAAACACCTAAGCGTCTTCCGGTTAACTCCGAAA-----GGTTG
GCA_000004655.2_ASM465v1_rm.out2130           -----------GAAACGCTGTCTTTCGGCTAGTTCCACAA-----GTTGG
GCA_000004655.2_ASM465v1_rm.out2521           ---------------------------------------A-----GTTGA
GCA_000004655.2_ASM465v1_rm.out3102           ----------------GAAACGCTAGGGGTAGCTTCACAA-----GGTAT
GCA_000004655.2_ASM465v1_rm.out3588           -----GAAACGCCCAGGGGGTCTTCCAGCTAGCTCCACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out3590           --------GAAACATCAGGGTCTTCCGACTAGCTCTACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out3652           --------GGGTTTTCCAGCTAGCTCTACAACATGGTAAA-----CATGG
GCA_000004655.2_ASM465v1_rm.out3907           -------GAAACGTCTAGGGTATTTCAGCTAGCTTCATAA----------
GCA_000004655.2_ASM465v1_rm.out4054           ----------------------------TTTTCGAGCTAG-----TTTAT
GCA_000004655.2_ASM465v1_rm.out4069           ------GAAATGCCTAGAGTTTTTCCGGCTAGCTTCATAA-----GTTAG
GCA_000004655.2_ASM465v1_rm.out4506           -------GAAACGCTCAGGTTCTTCCGACTAGCTCTATAAGGTGATGGGC
GCA_000004655.2_ASM465v1_rm.out4617           -----GAAACGTCTAGTGATCTTTTCAGCTAGCTCTACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out4851           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out4875           -------GAAACGACCAGGATTTTTCAGCTAGCTCCATAA-----GGTGA
GCA_000004655.2_ASM465v1_rm.out4892           --------AACACTTAGGAGTCTTTCAGTTAGCTCTACAA-----GATGG
GCA_000004655.2_ASM465v1_rm.out4948           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out5067           ------GAAACACTCAGGGGTCTTCCGGCTGGCTTTACAA-----TATGG
GCA_000004655.2_ASM465v1_rm.out5075           -----TTGAAACGCTCAGGGTCTTCCAGCTAGCTCTACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out5171           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out5436           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out5442           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out5634           -------GAAATGCATAGGGTTTTCCGACTAGCTCCACGA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out5715           --------AAACGCCCAGGGTCTTCCGGCTAGCTCCACAA-----GGTGA
GCA_000004655.2_ASM465v1_rm.out5728           ------GAAACATCCAGGTATCTTCCAGCTAGTTACA-------------
GCA_000004655.2_ASM465v1_rm.out6064           GAAACGCACAGGGCTAGAGCTATTCTGGCTAGCTCCGTAA-----AACGG
GCA_000004655.2_ASM465v1_rm.out6296           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out6304           ------GAAAGACTCGGAGTCTTATCAGCTAGCACCATAA-----GTTGG
GCA_000004655.2_ASM465v1_rm.out6711           ------GAAACGCCCAGGGATCTTCCGGCTTGCTTCACAA-----GGTGG
GCA_000004655.2_ASM465v1_rm.out6865           ------GAAACGCTTAGGGGTTTTCCGGCTAGCTCTCCAC---AAGATGG
GCA_000004655.2_ASM465v1_rm.out6986           ------------------------------------------------TG
GCA_000004655.2_ASM465v1_rm.out7040           -------GAAACACCCAGGGTCTTCCGGCTAACTCCACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out117   ------------------GATCTTCTGGCTAGCTCTACAA-----GATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out500   ------GAAACGTGTAAGGGTCTTTCAGCTAGCTCTACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out527   ---------------------CTTCCGGCTAGCTTCATAAGTTAAGATGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out636   -----------------GGGTCTTCCAGCTAGCTTTATAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out791   --------GAAACGTCCAGGATCTTCGGCTAGCTTCACAA-----AGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out844   -------GAAGCACTTAGGGTCTTCTGGTTAGCTTCATAA-----GTTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1263  ------GAAACGCCCAGGGATCTTTCGGCTTGCTTCACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1378  -------GAAACACCCAGAGTCTTTCAGCTAGCTTCACAA-----GATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1411  ------GAAATGCTTAGGGGTTTTCCGGCTAGCTCTCCAC---AAGATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1529  ------------------------------------------------TG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1881  ----------ACATCCAGGCTCTTTTAGCTAGCTCTACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2470  -------GAAACACACAAGGTTTTCTGGTTAGCTCTATAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2527  ------GAAACACCGAGGGATCTTCCGGTTAGCTACACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2860  -----GAAACGTCTAGTGATCTTTTCAGCTAGCTCTACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2956  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3012  -------GAAACCCCAAGGGTCTTTCGGCTAGCTCTACAA-----GGTGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3255  ------GAAACACCTAAGCGTCTTCCGGTTAACTCCGAAA-----GGTTG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3256  -----------GAAACGCTGTCTTTCGGCTAGTTCCACAA-----GTTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3268  -------GAAACACCCAGAGTCTTCTAGCTAGCTTCATAA-----CATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3286  --------GAAACACCTAGGTATTCCAGCTAGCTCCACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3371  ------GAAACGTTCAGTGGTTTTTCAGCTAGCTTTATAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3679  --------AACACCAAGGCGCATTCCGGCTAGCTCCACAA-----GGTGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3971  ------------AAACGCCCAGTGGTCTTTAGCTCCACAA-----GATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4017  -----GAAACGCTCGGGAGTTATTCTGGCTAGCTCTAAAA---------G
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4083  ----------------GAAACGCTAGGGGTAGCTTCACAA-----GGTAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4497  ----------------------GAAACGCTCAGGGTCTTC-----CGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4578  ------GAAACATACAGGGGTCTTTCGGCTAGCTCCACAA-----GGTAG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4598  ---TTAAAACACCTTATAGGTCTTTCGGCTAGCTCTATAA-----GATAA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4807  -------GAAACGTCTAGGGTATTTCAGCTAGCTTCATAA----------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4970  -----------------------------------TAGTTATAAAAAGCG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4975  ------GAAATGCCCAGAGTTTTTCCGGCTAGCTTCATAA-----GTTAG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5397  -------GAAACGCTCAGGGTCTTCCGACTAGCTCCATAAGGTGATGGGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5676  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5778  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5869  ------GAAACACTCAGGGGTCTTCCGGCTGGCTTTACAA-----TATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5883  -----TTGAAACGCCCAGGGTCTTCCAGCTAGCTCCACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6002  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6177  -----------------GGGTCTTCCGGCTAGCTCCACAA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6228  -----------------------------------------GTGAGAAAC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6342  -------GAAACAACCAGAGTCTCTCAGCTAGCTCCATAA-----GATGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6399  ------GAAACGTCTAGTAGTTTTCTAGCTAGCTCCACGA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6422  -------GAAATGCATAGGGTTTTCCGACTAGCTCCACGA-----GGTGG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6503  -------GAAACGACCAGGATTTTTCAGCTAGCTCCATAA-----GGTGA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6519  ------GAAACATCCAAGTATCTTCCAGCTAGTTACA-------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out7052  ------GAAAGACTCGGAGTCTTATCAGCTAGCACCATAA-----GTTGG

GCA_000004655.2_ASM465v1_rm.out113            TGAGTTAGCTAGGCTGA-GTTCGAAGTCT--------CACCCTTTTTATT
GCA_000004655.2_ASM465v1_rm.out153            --------GCCG-------ACCTGTGCTCCGAAGTCTCATCCCTTCTATT
GCA_000004655.2_ASM465v1_rm.out344            TGGGTTAGCCTGCCTAG------CTAGTTCGAAGCGGCACTCCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out528            TAGGCTAGATGATCTGG-GTTTGAAGTCT--------CACCTCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out583            TTGGCTAGACGACCTAA-GTTTGAAACCT--------CACCCCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out861            TGGGCTAGACAATCTGA-GTTCGAAACAT--------CTCTCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out901            TGAGCCAGCCAATCTAA-GTTTAAAGTCT--------TATCTCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out1308           TGGGCTACCTAGTTTGA-GTTCGAA--------------ATCTTTCTATT
GCA_000004655.2_ASM465v1_rm.out1371           TGAGCTAGACGACTTGG-ATTCAAAGGCT--------CATCCATTATAAT
GCA_000004655.2_ASM465v1_rm.out1673           GACTATACGACC-------TAGCTAGGTTTGAAGCCTCACCATTTCTAAT
GCA_000004655.2_ASM465v1_rm.out1843           TGGACTAGACAACATGT-GTTGGAAGCCT--------CACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out2125           TGAGCTAGCCAACATGG-GTTCGGAGCCT--------CACCCCTTCTATT
GCA_000004655.2_ASM465v1_rm.out2130           TAGGCTAGACAAATTGG-ATTCGAAATCT--------CACCCCTTCTAGT
GCA_000004655.2_ASM465v1_rm.out2521           TGAGCTCCACAAGGTGTGGTTCGAAGCC--------TTACCTCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out3102           AGGGATAGCCAACCTGG-ATTCGATACAT--------CACCCCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out3588           TGGGCTAGACAACCTAG-GTTCGAAGCCT--------TACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out3590           TGGGCTAGACGACCTAA-GTTCGAATCCTCACCCT--CACACCTTTTTAT
GCA_000004655.2_ASM465v1_rm.out3652           TGGGCTAGCCAGCTTGG-GTTCGATGCCT--------CACCCTTTTTATT
GCA_000004655.2_ASM465v1_rm.out3907           ----------GATCTCG-GTTCGAAGCCT--------CACCTCTTTAATT
GCA_000004655.2_ASM465v1_rm.out4054           AGAGCTAGACGACCTGG-GTTCAAA---------CCTCTTCTCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out4069           TGGGTTAGCTGACCTAG-ATTCAAAGTCT---------AATCCTTTTATT
GCA_000004655.2_ASM465v1_rm.out4506           TAGACGACTTGG-------ACTCGAAGC-------ATCACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out4617           TGGGCTAACCAGCTTGG-ACTCGAAGCAT--------CACCAATTCTATT
GCA_000004655.2_ASM465v1_rm.out4851           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out4875           TGGGCTAGTTGGACTGG-TTTCGAGGTCT--------CAATCCTTCTATT
GCA_000004655.2_ASM465v1_rm.out4892           TGGGCTAGACGATCTGT-GTTCGAAGCCTT-------CACCCCTTCTAAA
GCA_000004655.2_ASM465v1_rm.out4948           ------------CCCGG-GTTAGAAGCCT--------CACCCCTTCTAAC
GCA_000004655.2_ASM465v1_rm.out5067           TGAGCTAGACAACCTGG-ATTCGAGTCATTCCC-----------------
GCA_000004655.2_ASM465v1_rm.out5075           TGAGCTAGACAACCTGG-GTTCGAAGCAT--------CACCCCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out5171           -------GACAATCTGG-ATTCGAAGCCT--------CACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out5436           ---------------------TCGAAGC-------ATCATCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out5442           ---------------------TCGTAGC-------ATCGTCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out5634           TGGGCTAGATGATCTGG-GTTCGAAGTCT--------CACCCTTTCTAAT
GCA_000004655.2_ASM465v1_rm.out5715           TGAACTAGACAACCTAG-GTTCGAAGCCT--------CACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out5728           CAAAGTGATGGT-------CTAGCCGGTTCGAAGCATCACCCATTTTATT
GCA_000004655.2_ASM465v1_rm.out6064           TGAGCTAGACGTACGAC-CTTGA----TTCAAAACCGCACCTCTTTTAAT
GCA_000004655.2_ASM465v1_rm.out6296           -----------------------------------------AATTC----
GCA_000004655.2_ASM465v1_rm.out6304           TGGGCTAGCCAGCCAAG-GTTCGAG-CCT--------CATTATCTC----
GCA_000004655.2_ASM465v1_rm.out6711           TGGGTTAAATAACCTGG-GTTCGAAACAT--------CACTCTTTCTAAT
GCA_000004655.2_ASM465v1_rm.out6865           TGGGCTAGACGACCTGG-GTTTAAAGCCT--------CACCCCCTTTAAT
GCA_000004655.2_ASM465v1_rm.out6986           AGCATCAATAAC-------TCTGGCGTCGAGAAGCCTCACCCCTTCTAAT
GCA_000004655.2_ASM465v1_rm.out7040           TGAGCTAGACGACCTAG-ATTCGAAGCCTCACGCCCACACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out117   TGAGTTAGCTAGGCTGA-GTTCGAAGTCT--------CACCCTTTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out500   TTGGCTAGACGACCTAA-GTTTGAAACCT--------CACCCCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out527   TGGGTTAAACGATTTGG-ATTCGAATCCT--------CATCCTTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out636   TGAGCGATA-----TGG-ATTCGAAGGCT--------CACCTCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out791   TGAGCTAGACAATCTGA-GTTCAAAACAT--------CTCTCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out844   TGAGCCAGCCAATCTAA-GTTTAAAGTCT--------TATCTCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1263  TGGGCTAAATAACCTGG-GTTCGAAACAT--------CACTCTTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1378  TGAGGTAGACGATCTGA-ATTCGAAGCC-----------ACTCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1411  TGGGCTAGACGATCTGG-GTTCGAAGCCT--------CACCCCCTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1529  AGCATCAATAAC-------TCTGGCGTCGAGAAGCCTCACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1881  TGGACTAGTCGGTCTGG-ATTTGAATACT--------CACCCCTTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2470  TGGGCTACCTAGTTTGA-GTTCGAA--------------ATCTTTCTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2527  TGAGCTAGACGACTTGG-ATTCAAAGGCT--------CATCCATTATAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2860  TGGGCTAACCAGCTTGG-ACTCGAAGCAT--------CACCAATTCTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2956  -----------------------------------------CCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3012  TGGGCTAGACAACATGT-GTTCGAAGTCT--------CACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3255  TGAGCTAGCCAACATGG-GTTCGGAGCCT--------CACCCCTTCTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3256  TAGGCTAGACAAATTGG-ATTCGAAATCT--------CACCCCTTCTAGT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3268  TGGGCTAGCCAACCTAA-GTTCGAAGCAC--------------TCCTAGT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3286  TGGGCTAGACAACTTGG-GTTTGAAACCT--------CACCCCTTCTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3371  TGGATTAGACAACCTAG-GTTCGAAGTCTC---------ACTCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3679  TGGGCTAGACGACCTGG-GTTCAAAGCCT--------CACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3971  TAGGCTAAACGACCTGG-GTACGAAGCCT--------CACCCCTTCTAGT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4017  ACGGTTAGACGATATGG-GTTC-------------GAAACCCTTTTTTAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4083  AGGGATAGCCAACCTGG-ATTCGATACAT--------CACCCCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4497  TGAGCTAGACAACCTAG-ATTCGAAACCT--------CACTCTTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4578  TGGGCTAGACGTCCTGA-ATTCGAAACCT--------CACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4598  TGGGCTAAACCTAAACGAGTTTGAAGTCTCTCAC---CCATTTTTATTAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4807  ----------GATCTCG-GTTCGAAGCCT--------CACCTCTTTAATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4970  GACTATACGACC-------TAGCTAGGTTTGAAGCCTCACCATTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4975  TGGGCTAACCGATCTGG-GTTCAAAGCCT---------AATCCTTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5397  TAGATGACTTGG-------GTTCGAAGC-------ATCACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5676  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5778  ------------CCCGG-GTTAGAAGCCT--------CACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5869  TGAGCTAGACAACCTGG-ATTCGAGTCATTCCC-----------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5883  TGAGCTAGACGACCTGA-GTTCGAAGCAT--------CACCCCTTTTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6002  -------GACAATCTGG-ATTCAAAGCCT--------CACCCCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6177  TGAGCTAGACGACCTGG-GTTCGAAGCCT--------CTCCTCTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6228  GCCCAGGGTGAT-------CATCGAAGCATCATCCCTTCTAATTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6342  TGAGTTAGACGATCTGA-GTTCGAAAC-----------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6399  TGAGCTAGTCGGTCTAG-ATTCGAAGAATT--------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6422  TGGGCTAGATGATCTGG-GTTCGAAGTCT--------CACCCTTTCTAAT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6503  TGGGCTAGTTGGACTGG-TTTCGAGGTCT--------CAATCCTTCTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6519  CAAAGTGATGGT-------CTAGCCGGTTCGAAGCATCACCCATTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out7052  TGGGCTAGCCAGCCAAG-GTTCGAG-CCT--------CATTATCTC----

GCA_000004655.2_ASM465v1_rm.out113            TATTTGAT-ATTAGCTTATTTTTTAA----TATTCGTGTTTTT-
GCA_000004655.2_ASM465v1_rm.out153            TATTTGAT-ATCATGTCCTTCCCTAA----TATTCACGTTTT--
GCA_000004655.2_ASM465v1_rm.out344            TATTTAACAACGCTCTTT--------------------------
GCA_000004655.2_ASM465v1_rm.out528            TATTCGAT-ATTAGTTTTTTTTCCTAA---TATTCACGTCCTT-
GCA_000004655.2_ASM465v1_rm.out583            TATTTGAT-ATTACGTTCTTCTCTAA----TATTCGCGTCTTT-
GCA_000004655.2_ASM465v1_rm.out861            TATTTGAT-ATTAGGTTATTTCCTAA----TATTCGCCTCTTT-
GCA_000004655.2_ASM465v1_rm.out901            TATTTAAT-ACTAAGTTCTTTCATAA----TATTTATGTCTTT-
GCA_000004655.2_ASM465v1_rm.out1308           TATTTAAT-ATTAAGTTATTTTCTAA----TATTCACGTCTTT-
GCA_000004655.2_ASM465v1_rm.out1371           TATTTGAT-ATTAGGTAATTTCTTAA----TATTTACGTCTTT-
GCA_000004655.2_ASM465v1_rm.out1673           TATTTGAT-ATTAGGACATTCCCTAA----TATTTACGTCTT--
GCA_000004655.2_ASM465v1_rm.out1843           TATTTGAT-ATTATTTTTTTTTCTAA----TATTCGCGTCTTT-
GCA_000004655.2_ASM465v1_rm.out2125           TATTTGAT-ATTAGGTTCTTCCCTAA----TATTCACCTTTTT-
GCA_000004655.2_ASM465v1_rm.out2130           TATTTGAT-ATTAGGTTTTTTCATAA----TGTTTATTTTTTT-
GCA_000004655.2_ASM465v1_rm.out2521           TATTTAAT-ATTATGTCATTCCTTAA----TATTTATGTTTTT-
GCA_000004655.2_ASM465v1_rm.out3102           TATTTGAA-ATTAGATTCTTTTCTAA----TATTTGTGTTTTT-
GCA_000004655.2_ASM465v1_rm.out3588           TATTTGAT-GTTAGGTCCTTTCCTAA----TATTCACGTTTTT-
GCA_000004655.2_ASM465v1_rm.out3590           TATTTGAT-ATTAGGTCCCTCCCTAA----TATTCACGGTTTT-
GCA_000004655.2_ASM465v1_rm.out3652           TATTTGAT-ATTAGATTCTTTCCTAA----TATTTATGTTTTT-
GCA_000004655.2_ASM465v1_rm.out3907           TATTTGAT-ATTAGTTTCTTCCCTAATATATATTCGCGTTTT--
GCA_000004655.2_ASM465v1_rm.out4054           TATTTGAT-ATTAGGTCATTTCTTAA----TATTCGTGGTTTT-
GCA_000004655.2_ASM465v1_rm.out4069           TATTTGAT-ATTAGAT---ATCCTAA----------CGTTTTT-
GCA_000004655.2_ASM465v1_rm.out4506           TATTTGAT-ATTAGGTCCTTCCCTAA----TATTCGCGTTTTT-
GCA_000004655.2_ASM465v1_rm.out4617           TATTTGAT-ATTAGATTCTTTCCTAA----TATTCACCTTTTT-
GCA_000004655.2_ASM465v1_rm.out4851           -----CCA-AATAGGTTCTTTCTTAA----TATTCGCGCTTTT-
GCA_000004655.2_ASM465v1_rm.out4875           TTTTTGAT-ATTATGTCATTTCCTAA----TATTCACATTTTT-
GCA_000004655.2_ASM465v1_rm.out4892           CATTTGAT-ATTAAGTCATTTCTTAA----TATTCACCTTTTT-
GCA_000004655.2_ASM465v1_rm.out4948           TATTTGAT-ATTATGTTATTTTCTAA----TATTCGCGTATTT-
GCA_000004655.2_ASM465v1_rm.out5067           --------------------------------------------
GCA_000004655.2_ASM465v1_rm.out5075           TATTTGAT-ATTAGGTTCTTTCCTAA----TATTCACGTTTTT-
GCA_000004655.2_ASM465v1_rm.out5171           TATCTGAT-ATTAGATTCTTTCCTAA----TATTCGTGTCTTT-
GCA_000004655.2_ASM465v1_rm.out5436           TATTTAAT-ATTAGAACCTTCCCTAA----TATTCACGT-----
GCA_000004655.2_ASM465v1_rm.out5442           TATTTAAT-ATTAGAACCTTCCCTAA----TATTCACGT-----
GCA_000004655.2_ASM465v1_rm.out5634           TATTTGAT-ATTAGTTTTAGATTTCC----TA------------
GCA_000004655.2_ASM465v1_rm.out5715           TATTTGAT-ATTAGGTCCTTCTCTAA----TATTCACGTCTTT-
GCA_000004655.2_ASM465v1_rm.out5728           TATTTAAT-ATTAGGTCATTCCCTAA----TATTTTCATTTTT-
GCA_000004655.2_ASM465v1_rm.out6064           TATTTGAT-ATTAACTTCTTCCCTAA----AATTTATGTTTTT-
GCA_000004655.2_ASM465v1_rm.out6296           -------T-ATTGGGTT---------------------------
GCA_000004655.2_ASM465v1_rm.out6304           ---TTAAT------------------------------------
GCA_000004655.2_ASM465v1_rm.out6711           TATTTGATACGGATTTGCTATCCTAC----TGTCGACAGTTTTT
GCA_000004655.2_ASM465v1_rm.out6865           TATTTAAGAGTAAAT----TTCACAAA---ACTACACGTTTT--
GCA_000004655.2_ASM465v1_rm.out6986           TATTTAAT-ATTAGGTCCTTCTCTAA----TATTCGCGTTTTT-
GCA_000004655.2_ASM465v1_rm.out7040           TATTTGAT-ATTAGGTTCTTCTCTAA----TAATCGCGT-----
GCA_000576065.1_Oryza_nivara_v1.0_rm.out117   TATTTGAT-ATTAGCTTATTTTTTAA----TATTCGTGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out500   TATTTGAT-ATTACGTTCTTCTCTAA----TATTCGCGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out527   TATTTGAT-ATTAGTTTTTTTCTCTAA---TATTCACGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out636   TATTTGTATAATAGGTCATTCTCTAA----TATTTACGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out791   TATTTGAT-ATTAGGTTATTTCCTAA----TATTCGCCTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out844   TATTTAAT-ACTAAGTTCTTTCATAA----TATTTATGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1263  TATTTGATACGGATTTGCTATCCTAC----TGTCGACAGTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1378  TATTTAAT-ATTAGGTCATTTTCTAT----TATTCGTGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1411  TATTTAAGAGTAAAT----TTCACAAA---ACTACACGTTTT--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1529  TATTTAAT-ATTAGGTCCTTCTCTAA----TATTCGCGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1881  TATTTGAT-ATTTGGTCATTTCTAACA---TTCATATTCTT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2470  TATTTAAT-ATTAAGTTATTTTTTAA----TATTCACGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2527  TATTTGAT-ATTAGGTAATTTCTTAA----TATTTACGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2860  TATTTGAT-ATTAGATTCTTTCCTAA----TATTCACCTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2956  TATTTGAT-ATTAGGTTATTTCATAA----TATTCACGTT----
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3012  TATTTGAT-ATTATTTTTTTTTCTAA----TATTCGCGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3255  TATTTGAT-ATTAGGTTCTTCCCTAA----TATTCACCTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3256  TATTTGAT-ATTAGGTTTTTTCATAA----TGTTTATTTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3268  TATTCGAT-ATTAGGTTATTCTCTAA----TATTTATGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3286  TATTTGAT-ATTAGATCCTTCCATAA----CATTCACGTGTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3371  TATTTGAT-ATTAGGTCATTCCCTAA----TGTTCACGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3679  TATTTGAT-ATTAG------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3971  TATTTAAT-ATTAGGTTATTTCTTAA----TATTCACATATTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4017  TATTTGAT-ATTGGGCTCTTCTTAA-----TATTCGCGT-----
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4083  TATTTGAA-ATTAGATTCTTTTCTAA----TATTTGTGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4497  TATTTAAT-ATTAGGTTCTTCTCTAG----TATTCACGTTGTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4578  TATTTAAT-ATTAGATAATTCACGTT----TTT-----------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4598  TATTTGAT-ATTCGCGTCTTT-----------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4807  TATTTGAT-ATTAGTTTCTTCCCTAATATATATTCGCGTTTT--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4970  TATTTAAT-ATTAGGACATTCCCTAA----TATTTACGTCTT--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4975  TATTTGAT-ATTAGAT---ATCCTAA----------CGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5397  TATTTGAT-ATTAGATCCTTCCCTAA----TATTCGCGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5676  -----CCA-AATAGGTTCTTTCCTAA----TATTCGCGCTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5778  TATTTGAT-ATTATGTTATTTTCTAA----TATTCGCGTATTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5869  --------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5883  TATTTGAT-ATTATGTTCTTTTCTAA----TATTCACGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6002  TATCTGAT-ATTAGATTCTTTCCTAA----TATTCGTGTCTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6177  TATTTGAT-ATTAGGTCATTTTCTAA----TATTCACGTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6228  TATTTAAT-ATTAGAACCTTTCCTAA----TATTCACGT-----
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6342  --------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6399  ------------ACGTTATTTTTTAA----TATT----------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6422  TATTTGAT-ATTAGTTTTAGATTTCC----TA------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6503  TTTTTGAT-ATTATGTCATTTCCTAA----TATTCACATTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6519  TATTTAAT-ATTAGGTCATTCCCTAA----TATTTTCATTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out7052  ---TTAAT------------------------------------
//
