# STOCKHOLM 1.0

#=GS           GCA_000004655.2_ASM465v1_rm.out980 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1362 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2180 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2520 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out3986 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out4874 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5982 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7211 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7248 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7358 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7648 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7678 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out7793 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1156 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1786 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1788 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1894 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2139 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out2513 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3323 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4903 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6502 DE    SINE

GCA_000004655.2_ASM465v1_rm.out980            --------------------------------------TGTGAAAGATGC
GCA_000004655.2_ASM465v1_rm.out1362           GAGATGCGCTTCTAGCGCAGTTGGCACAAACAT-TCAGTGTGAACGTTGC
GCA_000004655.2_ASM465v1_rm.out2180           -----------CTAGCGCAATTGACAAAAAGCGTTCAATTTTGACTGCTG
GCA_000004655.2_ASM465v1_rm.out2520           --------------------------------------------------
GCA_000004655.2_ASM465v1_rm.out3986           GAGATGCGCTTCTAGCGCAGTTGGTACAAGCGT-TCAGTGTGAACGTTGC
GCA_000004655.2_ASM465v1_rm.out4874           GAGATGCGCTTCTAGCGCAGTTGGCACAAGCGT-TCAGTGTGAACGTTGC
GCA_000004655.2_ASM465v1_rm.out5982           GAGATGCGATTCTAGCGCAGTTGGCACAAGCGT-TCAGTGTGAACATTGC
GCA_000004655.2_ASM465v1_rm.out7211           ---ATGCGCTTCTAGCGCGGTTGGCGCAGGTAT-TCAGTTGTGAACGCTG
GCA_000004655.2_ASM465v1_rm.out7248           --------------------TTGGCACAAGCGT-TCAGTGTGAACGTTGC
GCA_000004655.2_ASM465v1_rm.out7358           ----------TCTAGCACAGTTGGCACATGCGT-TCAGTGTGAACACACT
GCA_000004655.2_ASM465v1_rm.out7648           -----------------------TTGGCACAAG-CGTTTGTGAACGTTGC
GCA_000004655.2_ASM465v1_rm.out7678           GAGATGCGATTCTAGTGCAGTTGGCACAAGCGT-TCATTGTGTACATTGC
GCA_000004655.2_ASM465v1_rm.out7793           GAGATGCGATTCTAGTGCAGTTGGCACAAGCGT-TCATTGTGTACATTGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1156  --------------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1786  -----------------------TTGGCACAAG-CGTTTGTGAACGTTGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1788  --------------------TTGGCACAAGCGT-TCAGTGTGAACGTTGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1894  ----------TCTAGCACAGTTGGCACATGCGT-TCAGTGTGAACACACT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2139  --------------------------------------TGTGAAAGATGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2513  GAGATGCGCTTCTAGCGCAGTTGGCACAAACAT-TCAGTGTGAACGTTGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3323  -----------CTAGCGCAATTGACAAAAAGCGTTCAATTTTGACTGCTG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4903  GAGATGCGCTTCTAGCGCAGTTGGTACAAGCGT-TCAGTGTGAACGTTGC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6502  GAGATGCGCTTCTAGCGCAGTTGGCACAAGCGT-TCAGTGTGAACGTTGC

GCA_000004655.2_ASM465v1_rm.out980            --ATTCTAAGTTCGACTACTAAATCTCTCACCTTCTGCTTGGATTGAA--
GCA_000004655.2_ASM465v1_rm.out1362           --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCACCTGGATTAAATG
GCA_000004655.2_ASM465v1_rm.out2180           --TAACCTAGTTCAACTCATCAATCTCTCACTTTCTGTCCGGATTAAATA
GCA_000004655.2_ASM465v1_rm.out2520           --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCGCCTGGAT------
GCA_000004655.2_ASM465v1_rm.out3986           --AGCCAGGGTTCAATTTCTGAACTCCTCACTTTCCACCTGGATTAAATG
GCA_000004655.2_ASM465v1_rm.out4874           --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCGCCTGGATTAAATG
GCA_000004655.2_ASM465v1_rm.out5982           --AGCCAGGGTTCGCTTGCTGAACTCCTCACCTTTCACCTGGATTAAA--
GCA_000004655.2_ASM465v1_rm.out7211           --CAGCTGGGTTTAATTCCTGAACTCATT-----------------TTTC
GCA_000004655.2_ASM465v1_rm.out7248           --AGCCAGGATTCGATTCCTGAACTCCTCACTTTTCGCCTGGATTAAA--
GCA_000004655.2_ASM465v1_rm.out7358           GTAGCCAGGGTTCCATTATTGAACCC------------------------
GCA_000004655.2_ASM465v1_rm.out7648           --AGCCAAGGTTCGATTCCTGAACTCCTTACCTTCCGCCTGGAT------
GCA_000004655.2_ASM465v1_rm.out7678           A-AGCCAGGGTTCGCTTGCTGATCTCCTCACCTTTCACCTGGATTAAA--
GCA_000004655.2_ASM465v1_rm.out7793           A-AGCCAGGGTTCGCTTGCTGATCTCCTCACCTTTCACCTGGATTAAA--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1156  --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCGCCTGGAT------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1786  --AGCCAGGTTTCGATTCCTGAACTCCTTACCTTCCGCCTGGAT------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1788  --AGTCAGGATTCGATTCGTGAACTCCTCACTTTTCGCCTGGATTAAA--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1894  GTAGCCAGGGTTCCATTATTGAACCC------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2139  --ATTCTAAGTTCGACTACTAAATCTCTCACCTTCTGCTTGGATTGAA--
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2513  --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCACCTGGATTAAATG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3323  --TAACCTAGTTCAACTCATCAATCTCTCACTTTCTGTCCGGATTAAATA
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4903  --AGCCAGGGTTCAATTTCTGAACTCCTCACTTTCCACCTGGATTAAATG
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6502  --AGCCAGGGTTCGATTCCTGAACTCCTCACCTTCCGCCTGGATTAAATG

GCA_000004655.2_ASM465v1_rm.out980            -------------TGAAGAGTTGGAAATATTTGGCTTTTCTATCTTAATT
GCA_000004655.2_ASM465v1_rm.out1362           AAGGGTTGGAAAATATG-----------------TGGCT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out2180           AAGGGCAA---------------AATATATGT--C--AA---CTTATATT
GCA_000004655.2_ASM465v1_rm.out2520           ---------TAAATGAAGGGTTGGAAATATGTGACTCCT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out3986           ACACCTGAATTAAATGAGGGTTGGAAATATGTGGCTCCT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out4874           AAGGGTTG---------------GAAATATGTGGCTCCT---CCTCTCCT
GCA_000004655.2_ASM465v1_rm.out5982           -------------TGAAGGGTTGGAAATATGTGGCTCCT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out7211           TGCTTGGATTAAATGAAAAGTTAGAAATATGTGGCTCCA---TCTATCTT
GCA_000004655.2_ASM465v1_rm.out7248           -------------TAAAGGGATGAAAATATGTGGCTCTT---CTTATCTT
GCA_000004655.2_ASM465v1_rm.out7358           -CTCTGGATTAAATAAAGCGTTAGAAATACGTGGTTACT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out7648           ---------TAAATGAAGGGCCGGAAATATGTGGCTCTT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out7678           -------------TGAAGGGTTGGAAATATGTGGCTCCT---CCTATCTT
GCA_000004655.2_ASM465v1_rm.out7793           -------------TGAAGGGTTGGAAATATGTGGCTCCT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1156  ---------TAAATGAAGGGTTGGAAATATGTGACTCCT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1786  ---------TAAATGAAGGGCCGGAAATATGTGGCTCTT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1788  -------------TGAAGGGATGAAAATATGTGGCTCTT---CTTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1894  -CTCTGGATTAAATAAAGCGTTAGAAATACGTGGTTACT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2139  -------------TGAAGAGTTAGAAATATTTGGCTTTTCAATCTTAATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2513  AAGGGTTGGAAAATATG-----------------TGGCT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3323  AAGGGCAA---------------AATATATGT--C--AA---CTTATATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4903  CCACCTGAATTAAATGAGGGTTGGAAATATGTGGCTCCT---CCTATCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6502  AAGGGTTG---------------GAAATATGTGGCTCCT---CCTCTCCT

GCA_000004655.2_ASM465v1_rm.out980            ACAACACATTGATGGCTAGCTTCTTATAGCCATCCTAACTTTTTT
GCA_000004655.2_ASM465v1_rm.out1362           AATTACATTGGATGGCTAGCTCCTTCTAGCCATCCCAAC------
GCA_000004655.2_ASM465v1_rm.out2180           AATTGTATTAGATG----GCTCATTTTAACTATGTCATTGTTTTT
GCA_000004655.2_ASM465v1_rm.out2520           AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAACCTTTT-
GCA_000004655.2_ASM465v1_rm.out3986           AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAACTTTTTT
GCA_000004655.2_ASM465v1_rm.out4874           TCTAGCCATCCCAACCTTTTT------------------------
GCA_000004655.2_ASM465v1_rm.out5982           AATTCCATTGGTTGGTTAGCTCCTACTAGCCATCCCAAC------
GCA_000004655.2_ASM465v1_rm.out7211           AATTATATCGGATGGCTAGCTCCTTCTAACCATCCCAACTTTTTT
GCA_000004655.2_ASM465v1_rm.out7248           AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCGCAAC------
GCA_000004655.2_ASM465v1_rm.out7358           AATCCCT--CGTATGCTAGCTCTTTCTAGCTATCCTAGCTTT---
GCA_000004655.2_ASM465v1_rm.out7648           AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAAC------
GCA_000004655.2_ASM465v1_rm.out7678           AATTCCATTGGTTGGTTACCTCCTACTAGCCATCCCAAC------
GCA_000004655.2_ASM465v1_rm.out7793           AATTCCATTGGTTGGTTACCTCCTACTAGCCATCCCAAC------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1156  AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAACCTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1786  AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAAC------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1788  AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCGCAAC------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1894  AATCCCT--CGTATGCTAGCTCTTTCTAGCTATCCTAGCTTT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2139  ACAACACATTGATGGCTAGCTTCTTATAGCCATCCTAACTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out2513  AATTACATTGGATGGCTAGCTCCTTCTAGCCATCCCAAC------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3323  AATTGTATTAGATG----GCTCATTTTAACTATGTCATTGTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4903  AATTCCATTGGATGGCTAGCTCCTTCTAGCCATCCCAACTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6502  TCTAGCCATCCCAACCTTTTT------------------------
//
