# STOCKHOLM 1.0

#=GS           GCA_000004655.2_ASM465v1_rm.out227 DE    SINE
#=GS           GCA_000004655.2_ASM465v1_rm.out527 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out1600 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2435 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out2585 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out5693 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6782 DE    SINE
#=GS          GCA_000004655.2_ASM465v1_rm.out6849 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out243 DE    SINE
#=GS  GCA_000576065.1_Oryza_nivara_v1.0_rm.out454 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1333 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out1423 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3637 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out3672 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out4590 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out5970 DE    SINE
#=GS GCA_000576065.1_Oryza_nivara_v1.0_rm.out6842 DE    SINE

GCA_000004655.2_ASM465v1_rm.out227            -------------------GAAAAACGCCTAGGGGTTTTCCGGTTAGCTC
GCA_000004655.2_ASM465v1_rm.out527            --------------------GAAAAACGTTAGGGTTTTTTCGGCTAGCTT
GCA_000004655.2_ASM465v1_rm.out1600           -------------------------------GGGTTTTCCGGCTAAACTT
GCA_000004655.2_ASM465v1_rm.out2435           ---------------------AAAACAATCAGAGATCTTTCGGCTAGCTC
GCA_000004655.2_ASM465v1_rm.out2585           -----------------GAAAAACGTCTATATGAATCGTTCGGCTAGCTT
GCA_000004655.2_ASM465v1_rm.out5693           --------------------AAAAACGTCTAGAGGTTTTCCGGTTAGCTC
GCA_000004655.2_ASM465v1_rm.out6782           ---------------GAGAAACGTACATGGATTTATTTTCTGGCTAGCTT
GCA_000004655.2_ASM465v1_rm.out6849           --------------------AATAACGTCTGTGGATACTCCGGCTAGCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out243   -------------------GAAAAACGCCTAGGGGTTTTCCGGTTAGCTC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out454   --------------------GAAAAACGTTAGGGTTTTTTCGGCTAGTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1333  ---------------GAGAAACGTACATGGATTTATTTTCTGGCTAGCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1423  ATCATCTGTATCAGATTTCGAGAAACGTCCAGTGATCTTTCGGCTAGCTC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3637  -------------------------------GGGTTTTCCGGCTAAACTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3672  -------------------GAAAAACGTCTAAGAATCTTTCGGCTAGATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4590  -----------------GAGAAATGCCTAGGGGTTTTCCGGCTATAGCTC
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5970  --------------------AATAACGTCTGTGGATACTCCGGCTAGCTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6842  ----------------------AAACGTCCAAAGGTTTTCCGATTAGCTC

GCA_000004655.2_ASM465v1_rm.out227            CACAAGGTGA-TAGGCTGATGATCTAGATTTGAAGTCTCATCCATTC---
GCA_000004655.2_ASM465v1_rm.out527            TATAAGGTGGTGGGCTAGATGATTTAAATTTGAAGTCTCATCTTTTC---
GCA_000004655.2_ASM465v1_rm.out1600           CACAAGGTGATAGGTTAGATGATCTGGGTTTAAAGTTTTACCCC-TC---
GCA_000004655.2_ASM465v1_rm.out2435           CATAAGACGATGGGCTAACTGATCTTGATTTGAAGTTTTATCCCTTC---
GCA_000004655.2_ASM465v1_rm.out2585           AAAA-GGTGGTTGGCTAGT-----GGGATTTGAAGTCTCATCCT-TT---
GCA_000004655.2_ASM465v1_rm.out5693           CACAAGACTAGCCT----------G-GATTCAAAGCCCCACCTCTTT---
GCA_000004655.2_ASM465v1_rm.out6782           CACAAG-TGGTTAGCTAATTGATCTGGATTTAAAGACTCATCTATTC---
GCA_000004655.2_ASM465v1_rm.out6849           CACAAGATGT-TAACTAGATGATCTGGGTTAGAAGTCTCGTCCCTTA---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out243   CACAAGGTGA-TAGGCTGATGATCTAGATTTGAAGTCTCATCCATTC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out454   TATAAGGTGGTGGGCTAGATGATTTAGATTCGAAGTCTTATCTTTTT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1333  CACAAG-TGGTTAGCTAATTGATCTGGATTTAAAGACTCATCTATTC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1423  CACAAGATACATCC----------TGGATTTAAAGTCCCACCTTTTTATT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3637  CACAAGGTGATAGGTTAGATGATCTGGGTTTAAAGTTTTATCCC-TC---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3672  CAAA-GGTGGTGGCTTAGTTTGTTTGAATTTAAAGTCTCACCAT-TT---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4590  AACAAGGTGGTGGACTAGCCGGTCTGGATTCAAAG---------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5970  CATAAGATGTTGAACTAGATGATCTGGGTTAGAAGTCTCGTCCCTTA---
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6842  TACAAGGTGGTGAGCCAGATGACCTAAATTTAAAGTCTCATCTTTTC---

GCA_000004655.2_ASM465v1_rm.out227            TAATTATTTAATTT------CTTCCTTAAT--ATTCGTGTCATTT-
GCA_000004655.2_ASM465v1_rm.out527            TAGTTATTTGGTATTTTAGATCATTCTTTGATATTCGCGTCTATTT
GCA_000004655.2_ASM465v1_rm.out1600           TAATTATTTAATATTAAGTTATTCTTTAAT--ATTCGCGTCTTTT-
GCA_000004655.2_ASM465v1_rm.out2435           TAATTATTTAATATTAGGTTATTATCTAATTAATATTCG-------
GCA_000004655.2_ASM465v1_rm.out2585           TAATTATTTAATATTAGATTCATCCTAATATTTAC--GTTTTTT--
GCA_000004655.2_ASM465v1_rm.out5693           TATTTATTTGATATTTGATTTTCCCTAAT---ATTCAT--------
GCA_000004655.2_ASM465v1_rm.out6782           TATTTATTTGATATTAAATTCTTCTCTACT--ATTCACGTTTTTT-
GCA_000004655.2_ASM465v1_rm.out6849           TAATAAATTAATATTAAGTTCTTCTTTAGT--ATTCGCGTAGTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out243   TAATTATTTAATTT------CTTCCTTAAT--ATTCGTGTCATTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out454   TAATTATTTAATATTTTAGATCATTCTTTGATATTCGCGTCTATTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1333  TATTTATTTGATATTAAATTCTTCTCTACT--ATTCACGTTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out1423  TATTTATTTAATATTAGATCCTTTCTTAT---ATTCATGTTTTTTT
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3637  TAATTATTTAATATTAAGTTATTCTTTAAT--ATCCGCGTCTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out3672  TAATTATTTGATATTAGATTCATTCGTAATATTTA--CGTTTTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out4590  ----------------------------------------------
GCA_000576065.1_Oryza_nivara_v1.0_rm.out5970  TAATAAATTAATATTAAGTTCTTCTTTAGT--ATTCGCGTCGTTT-
GCA_000576065.1_Oryza_nivara_v1.0_rm.out6842  TAATTATTTGATATTAGATATTTCTCTA--ATATTCGTGTCTTTT-
//
