ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package feature
  Definition Classes
    ds
-  package fragment
  Definition Classes
    ds
-  package read
  Definition Classes
    ds
-  package sequence
  Definition Classes
    ds
-  package variant
  Definition Classes
    ds
- ADAMContext
- ADAMSaveAnyArgs
- AvroGenomicDataset
- AvroReadGroupGenomicDataset
- DatasetBoundGenericGenomicDataset
- DatasetBoundGenomicDataset
- FullOuterShuffleRegionJoin
- GenericConverter
- GenericGenomicDataset
- GenomeBins
- GenomicBroadcast
- GenomicDataset
- GenomicDatasetConversion
- GenomicDatasetWithLineage
- GenomicPositionPartitioner
- GenomicRegionPartitioner
- InFormatter
- InFormatterCompanion
- InnerShuffleRegionJoin
- InnerShuffleRegionJoinAndGroupByLeft
- InnerTreeRegionJoin
- InnerTreeRegionJoinAndGroupByRight
- LeftOuterShuffleRegionJoin
- LeftOuterShuffleRegionJoinAndGroupByLeft
- MultisampleAvroGenomicDataset
- MultisampleGenomicDataset
- OutFormatter
- RDDBoundGenericGenomicDataset
- ReferencePartitioner
- RegionJoin
- RightOuterShuffleRegionJoinAndGroupByLeft
- RightOuterTreeRegionJoin
- RightOuterTreeRegionJoinAndGroupByRight
- ShuffleRegionJoin
- SortedIntervalPartitionJoinWithVictims
- TreeRegionJoin
- VictimlessSortedIntervalPartitionJoin

c

org.bdgenomics.adam.ds

# RightOuterTreeRegionJoin 

###

#### case class RightOuterTreeRegionJoin[T, U]()(implicit evidence$3: ClassTag[T], evidence$4: ClassTag[U]) extends RegionJoin[T, U, Option[T], U] with TreeRegionJoin[T, U, Option[T], U] with Product with Serializable

Implements a right outer region join where the left side of the join is broadcast.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, Option[T], U], RegionJoin[T, U, Option[T], U], Serializable, Serializable, AnyRef, Any
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Inherited

1. RightOuterTreeRegionJoin
2. Product
3. Equals
4. TreeRegionJoin
5. RegionJoin
6. Serializable
7. Serializable
8. AnyRef
9. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new RightOuterTreeRegionJoin()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Option[T], U)]
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native() @HotSpotIntrinsicCandidate()
9.  final def isInstanceOf[T0]: Boolean
   Definition Classes
     Any
10.  def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Option[T], U)]
11.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
12.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
13.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
14.  def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Option[T], U)]

    Performs a right outer region join between two RDDs.

    Performs a right outer region join between two RDDs.

    baseRDD

      The 'left' side of the join

    joinedRDD

      The 'right' side of the join

    returns

      An RDD of pairs (Option[x], y), where the optional x value is from baseRDD, y is from joinedRDD, and the region corresponding to x overlaps the region corresponding to y. If there are no keys in the baseRDD that overlap a given key (y) from the joinedRDD, x will be None.

    Definition Classes
      RightOuterTreeRegionJoin → RegionJoin
15.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
16.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
17.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
18.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated
   Deprecated

### Inherited from Product

### Inherited from Equals

### Inherited from TreeRegionJoin[T, U, Option[T], U]

### Inherited from RegionJoin[T, U, Option[T], U]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped