ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package read
  Definition Classes
    ds
- ADAMBAMOutputFormat
- ADAMBAMOutputFormatHeaderLess
- ADAMCRAMOutputFormat
- ADAMCRAMOutputFormatHeaderLess
- ADAMSAMOutputFormat
- ADAMSAMOutputFormatHeaderLess
- AlignmentDataset
- AnySAMInFormatter
- AnySAMInFormatterCompanion
- AnySAMOutFormatter
- BAMInFormatter
- DatasetBoundAlignmentDataset
- DatasetBoundReadDataset
- FASTQInFormatter
- IncorrectMDTagException
- ParquetUnboundAlignmentDataset
- ParquetUnboundReadDataset
- QualityScoreBin
- RDDBoundAlignmentDataset
- RDDBoundReadDataset
- ReadDataset
- ReferencePositionPairSerializer
- SAMInFormatter
- SingleReadBucketSerializer

o

org.bdgenomics.adam.ds.read

# QualityScoreBin 

###
Companion class QualityScoreBin

#### object QualityScoreBin extends Serializable

Companion object for creating quality score bins.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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1.  final def !=(arg0: Any): Boolean
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2.  final def ##(): Int
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3.  final def ==(arg0: Any): Boolean
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4.  def apply(binString: String): Seq[QualityScoreBin]

   Creates multiple bins from a string of bin descriptions.

   Creates multiple bins from a string of bin descriptions.

   The string defining the bins should have each bin separated by a semicolon (";"). Each bin should be a comma separated list of three digits. The first digit is the low end of the bin, the second digit is the high end of the bin, and the third digit is the quality score to assign to bases in the bin. E.g., to define a bin that runs from 0 to 20 (low end inclusive, high end exclusive), and that assigns a quality score of 10, we'd write:

   0,20,10

   To define this bin and another bin that runs from 20 to 40 and assigns a score of 30, we would write:

   0,20,10;20,40,30

   binString

     A string defining the bins to create.

   returns

     Returns a Seq of bins.

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