ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
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- DNAAlphabet
- IUPACAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
- ReadGroup
- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# MdTagEvent 

###

#### object MdTagEvent extends Enumeration

Enumeration describing sequence events in an MD tag:

* Match is a sequence match (i.e., every base in the aligned sequence matches the reference sequence) * Mismatch is a sequence mismatch (there are bases that do not match the reference sequence) * Delete indicates that bases that were present in the reference sequence were deleted in the read sequence

Linear Supertypes
Enumeration, Serializable, Serializable, AnyRef, Any
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1. MdTagEvent
2. Enumeration
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### Type Members

1.  class Val extends Value with Serializable
   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
2.  abstract class Value extends Ordered[Value] with Serializable
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
3.  class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
   Definition Classes
     Enumeration

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  val Delete: Value
5.  val Match: Value
6.  val Mismatch: Value
7.  final def Value(i: Int, name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
8.  final def Value(name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
9.  final def Value(i: Int): Value
   Attributes
     protected
   Definition Classes
     Enumeration
10.  final def Value: Value
    Attributes
      protected
    Definition Classes
      Enumeration
11.  final def apply(x: Int): Value
    Definition Classes
      Enumeration
12.  final def asInstanceOf[T0]: T0
    Definition Classes
      Any
13.  def clone(): AnyRef
    Attributes
      protected[lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native() @HotSpotIntrinsicCandidate()
14.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
15.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
16.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
17.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
18.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
19.  final def maxId: Int
    Definition Classes
      Enumeration
20.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
21.  var nextId: Int
    Attributes
      protected
    Definition Classes
      Enumeration
22.  var nextName: Iterator[String]
    Attributes
      protected
    Definition Classes
      Enumeration
23.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
24.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
25.  def readResolve(): AnyRef
    Attributes
      protected
    Definition Classes
      Enumeration
26.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
27.  def toString(): String
    Definition Classes
      Enumeration → AnyRef → Any
28.  def values: ValueSet
    Definition Classes
      Enumeration
29.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
30.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
31.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
32.  final def withName(s: String): Value
    Definition Classes
      Enumeration

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated
   Deprecated

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped