ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
- Coverage
- DNAAlphabet
- IUPACAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
- ReadGroup
- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# OptionalPositionOrdering 

###

#### object OptionalPositionOrdering extends OptionalReferenceOrdering[ReferencePosition]

A sort order that orders all given positions lexicographically by reference and numerically within a single reference, and puts all non-provided positions at the end. An extension of PositionOrdering to Optional data.

See also

  PositionOrdering

Linear Supertypes
OptionalReferenceOrdering[ReferencePosition], Ordering[Option[ReferencePosition]], PartialOrdering[Option[ReferencePosition]], Equiv[Option[ReferencePosition]], Serializable, Serializable, Comparator[Option[ReferencePosition]], AnyRef, Any
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2. By Inheritance

Inherited

1. OptionalPositionOrdering
2. OptionalReferenceOrdering
3. Ordering
4. PartialOrdering
5. Equiv
6. Serializable
7. Serializable
8. Comparator
9. AnyRef
10. Any

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Visibility

1. Public
2. All

### Type Members

1.  class Ops extends AnyRef
   Definition Classes
     Ordering

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  val baseOrdering: PositionOrdering.type
   Definition Classes
     OptionalPositionOrdering → OptionalReferenceOrdering
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  def compare(a: Option[ReferencePosition], b: Option[ReferencePosition]): Int
   Definition Classes
     OptionalReferenceOrdering → Ordering → Comparator
8.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
9.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
10.  def equiv(x: Option[ReferencePosition], y: Option[ReferencePosition]): Boolean
    Definition Classes
      Ordering → PartialOrdering → Equiv
11.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
12.  def gt(x: Option[ReferencePosition], y: Option[ReferencePosition]): Boolean
    Definition Classes
      Ordering → PartialOrdering
13.  def gteq(x: Option[ReferencePosition], y: Option[ReferencePosition]): Boolean
    Definition Classes
      Ordering → PartialOrdering
14.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
15.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
16.  def lt(x: Option[ReferencePosition], y: Option[ReferencePosition]): Boolean
    Definition Classes
      Ordering → PartialOrdering
17.  def lteq(x: Option[ReferencePosition], y: Option[ReferencePosition]): Boolean
    Definition Classes
      Ordering → PartialOrdering
18.  def max(x: Option[ReferencePosition], y: Option[ReferencePosition]): Option[ReferencePosition]
    Definition Classes
      Ordering
19.  def min(x: Option[ReferencePosition], y: Option[ReferencePosition]): Option[ReferencePosition]
    Definition Classes
      Ordering
20.  implicit def mkOrderingOps(lhs: Option[ReferencePosition]): Ops
    Definition Classes
      Ordering
21.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
22.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
23.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
24.  def on[U](f: (U) ⇒ Option[ReferencePosition]): Ordering[U]
    Definition Classes
      Ordering
25.  def reverse: Ordering[Option[ReferencePosition]]
    Definition Classes
      Ordering → PartialOrdering
26.  def reversed(): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
27.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
28.  def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: Option[ReferencePosition], _ <: U]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
29.  def thenComparing[U](arg0: Function[_ >: Option[ReferencePosition], _ <: U], arg1: Comparator[_ >: U]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
30.  def thenComparing(arg0: Comparator[_ >: Option[ReferencePosition]]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
31.  def thenComparingDouble(arg0: ToDoubleFunction[_ >: Option[ReferencePosition]]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
32.  def thenComparingInt(arg0: ToIntFunction[_ >: Option[ReferencePosition]]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
33.  def thenComparingLong(arg0: ToLongFunction[_ >: Option[ReferencePosition]]): Comparator[Option[ReferencePosition]]
    Definition Classes
      Comparator
34.  def toString(): String
    Definition Classes
      AnyRef → Any
35.  def tryCompare(x: Option[ReferencePosition], y: Option[ReferencePosition]): Some[Int]
    Definition Classes
      Ordering → PartialOrdering
36.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
37.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
38.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated
   Deprecated

### Inherited from OptionalReferenceOrdering[ReferencePosition]

### Inherited from Ordering[Option[ReferencePosition]]

### Inherited from PartialOrdering[Option[ReferencePosition]]

### Inherited from Equiv[Option[ReferencePosition]]

### Inherited from Serializable

### Inherited from Comparator[Option[ReferencePosition]]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped