ADAM_2.12: Core 0.35.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package sql
  Definition Classes
    adam
- Alignment
- Dbxref
- Feature
- Fragment
- Genotype
- OntologyTerm
- ProcessingStep
- Read
- Reference
- Sequence
- Slice
- TranscriptEffect
- Variant
- VariantAnnotation
- VariantCallingAnnotations
- VariantContext

c

org.bdgenomics.adam.sql

# VariantCallingAnnotations 

###
Companion object VariantCallingAnnotations

#### case class VariantCallingAnnotations(filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), downsampled: Option[Boolean] = None, baseQRankSum: Option[Float] = None, fisherStrandBiasPValue: Option[Float] = None, rmsMapQ: Option[Float] = None, mapq0Reads: Option[Int] = None, mqRankSum: Option[Float] = None, readPositionRankSum: Option[Float] = None, genotypePriors: Seq[Float] = Seq(), genotypePosteriors: Seq[Float] = Seq(), vqslod: Option[Float] = None, culprit: Option[String] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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2. By Inheritance

Inherited

1. VariantCallingAnnotations
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new VariantCallingAnnotations(filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), downsampled: Option[Boolean] = None, baseQRankSum: Option[Float] = None, fisherStrandBiasPValue: Option[Float] = None, rmsMapQ: Option[Float] = None, mapq0Reads: Option[Int] = None, mqRankSum: Option[Float] = None, readPositionRankSum: Option[Float] = None, genotypePriors: Seq[Float] = Seq(), genotypePosteriors: Seq[Float] = Seq(), vqslod: Option[Float] = None, culprit: Option[String] = None, attributes: Map[String, String] = Map())

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  val attributes: Map[String, String]
6.  val baseQRankSum: Option[Float]
7.  def canEqual(that: Any): Boolean
   Definition Classes
     VariantCallingAnnotations → Equals
8.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
9.  val culprit: Option[String]
10.  val downsampled: Option[Boolean]
11.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
12.  val filtersApplied: Option[Boolean]
13.  val filtersFailed: Seq[String]
14.  val filtersPassed: Option[Boolean]
15.  val fisherStrandBiasPValue: Option[Float]
16.  val genotypePosteriors: Seq[Float]
17.  val genotypePriors: Seq[Float]
18.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
19.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
20.  val mapq0Reads: Option[Int]
21.  val mqRankSum: Option[Float]
22.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
23.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
24.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
25.  def productArity: Int
    Definition Classes
      VariantCallingAnnotations → Product
26.  def productElement(i: Int): Any
    Definition Classes
      VariantCallingAnnotations → Product
27.  val readPositionRankSum: Option[Float]
28.  val rmsMapQ: Option[Float]
29.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
30.  def toAvro: formats.avro.VariantCallingAnnotations
31.  val vqslod: Option[Float]
32.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
33.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
34.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped