org.bdgenomics.adam.rdd

# ADAMContext

###
Related Docs: class ADAMContext | package rdd

#### object ADAMContext extends Serializable

This singleton provides an implicit conversion from a SparkContext to the ADAMContext, as well as implicit functions for the Pipe API.

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### Value Members

1. #### final def !=(arg0: Any): Boolean

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2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

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4. #### def ADAMContextFromSession(ss: SparkSession): ADAMContext

   Creates an ADAMContext from a SparkSession.

   Creates an ADAMContext from a SparkSession. Sets active session, including SQLContext, to input session.

   ss

     SparkSession

   returns

     ADAMContext

5. #### implicit def AlignmentsToAlignmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Alignment]): AlignmentDataset

6. #### implicit def AlignmentsToCoverageConversionFn(gDataset: AlignmentDataset, rdd: RDD[Coverage]): CoverageDataset

7. #### implicit def AlignmentsToCoverageDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Coverage]): CoverageDataset

8. #### implicit def AlignmentsToFeaturesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Feature]): FeatureDataset

9. #### implicit def AlignmentsToFeaturesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Feature]): FeatureDataset

10. #### implicit def AlignmentsToFragmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Fragment]): FragmentDataset

11. #### implicit def AlignmentsToFragmentsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Fragment]): FragmentDataset

12. #### implicit def AlignmentsToGenotypesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Genotype]): GenotypeDataset

13. #### implicit def AlignmentsToGenotypesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Genotype]): GenotypeDataset

14. #### implicit def AlignmentsToReadsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Read]): ReadDataset

15. #### implicit def AlignmentsToReadsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Read]): ReadDataset

16. #### implicit def AlignmentsToSequencesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Sequence]): SequenceDataset

17. #### implicit def AlignmentsToSequencesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Sequence]): SequenceDataset

18. #### implicit def AlignmentsToSlicesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Slice]): SliceDataset

19. #### implicit def AlignmentsToSlicesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Slice]): SliceDataset

20. #### implicit def AlignmentsToVariantContextConversionFn(gDataset: AlignmentDataset, rdd: RDD[VariantContext]): VariantContextDataset

21. #### implicit def AlignmentsToVariantsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Variant]): VariantDataset

22. #### implicit def AlignmentsToVariantsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Variant]): VariantDataset

23. #### final def asInstanceOf[T0]: T0

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24. #### def clone(): AnyRef

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25. #### implicit def coverageToAlignmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Alignment]): AlignmentDataset

26. #### implicit def coverageToAlignmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Alignment]): AlignmentDataset

27. #### implicit def coverageToCoverageConversionFn(gDataset: CoverageDataset, rdd: RDD[Coverage]): CoverageDataset

28. #### implicit def coverageToFeaturesConversionFn(gDataset: CoverageDataset, rdd: RDD[Feature]): FeatureDataset

29. #### implicit def coverageToFeaturesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Feature]): FeatureDataset

30. #### implicit def coverageToFragmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Fragment]): FragmentDataset

31. #### implicit def coverageToFragmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Fragment]): FragmentDataset

32. #### implicit def coverageToGenotypesConversionFn(gDataset: CoverageDataset, rdd: RDD[Genotype]): GenotypeDataset

33. #### implicit def coverageToGenotypesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Genotype]): GenotypeDataset

34. #### implicit def coverageToReadsConversionFn(gDataset: CoverageDataset, rdd: RDD[Read]): ReadDataset

35. #### implicit def coverageToReadsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Read]): ReadDataset

36. #### implicit def coverageToSequencesConversionFn(gDataset: CoverageDataset, rdd: RDD[Sequence]): SequenceDataset

37. #### implicit def coverageToSequencesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Sequence]): SequenceDataset

38. #### implicit def coverageToSlicesConversionFn(gDataset: CoverageDataset, rdd: RDD[Slice]): SliceDataset

39. #### implicit def coverageToSlicesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Slice]): SliceDataset

40. #### implicit def coverageToVariantContextConversionFn(gDataset: CoverageDataset, rdd: RDD[VariantContext]): VariantContextDataset

41. #### implicit def coverageToVariantsConversionFn(gDataset: CoverageDataset, rdd: RDD[Variant]): VariantDataset

42. #### implicit def coverageToVariantsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Variant]): VariantDataset

43. #### final def eq(arg0: AnyRef): Boolean

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44. #### def equals(arg0: Any): Boolean

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      AnyRef → Any

45. #### implicit def featuresToAlignmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Alignment]): AlignmentDataset

46. #### implicit def featuresToAlignmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Alignment]): AlignmentDataset

47. #### implicit def featuresToCoverageConversionFn(gDataset: FeatureDataset, rdd: RDD[Coverage]): CoverageDataset

48. #### implicit def featuresToCoverageDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Coverage]): CoverageDataset

49. #### implicit def featuresToFeaturesConversionFn(gDataset: FeatureDataset, rdd: RDD[Feature]): FeatureDataset

50. #### implicit def featuresToFragmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Fragment]): FragmentDataset

51. #### implicit def featuresToFragmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Fragment]): FragmentDataset

52. #### implicit def featuresToGenotypesConversionFn(gDataset: FeatureDataset, rdd: RDD[Genotype]): GenotypeDataset

53. #### implicit def featuresToGenotypesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Genotype]): GenotypeDataset

54. #### implicit def featuresToReadsConversionFn(gDataset: FeatureDataset, rdd: RDD[Read]): ReadDataset

55. #### implicit def featuresToReadsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Read]): ReadDataset

56. #### implicit def featuresToSequencesConversionFn(gDataset: FeatureDataset, rdd: RDD[Sequence]): SequenceDataset

57. #### implicit def featuresToSequencesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Sequence]): SequenceDataset

58. #### implicit def featuresToSlicesConversionFn(gDataset: FeatureDataset, rdd: RDD[Slice]): SliceDataset

59. #### implicit def featuresToSlicesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Slice]): SliceDataset

60. #### implicit def featuresToVariantContextConversionFn(gDataset: FeatureDataset, rdd: RDD[VariantContext]): VariantContextDataset

61. #### implicit def featuresToVariantsConversionFn(gDataset: FeatureDataset, rdd: RDD[Variant]): VariantDataset

62. #### implicit def featuresToVariantsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Variant]): VariantDataset

63. #### def finalize(): Unit

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      protected[java.lang]
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      @throws( classOf[java.lang.Throwable] )

64. #### implicit def fragmentsToAlignmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Alignment]): AlignmentDataset

65. #### implicit def fragmentsToAlignmentsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Alignment]): AlignmentDataset

66. #### implicit def fragmentsToCoverageConversionFn(gDataset: FragmentDataset, rdd: RDD[Coverage]): CoverageDataset

67. #### implicit def fragmentsToCoverageDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Coverage]): CoverageDataset

68. #### implicit def fragmentsToFeaturesConversionFn(gDataset: FragmentDataset, rdd: RDD[Feature]): FeatureDataset

69. #### implicit def fragmentsToFeaturesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Feature]): FeatureDataset

70. #### implicit def fragmentsToFragmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Fragment]): FragmentDataset

71. #### implicit def fragmentsToGenotypesConversionFn(gDataset: FragmentDataset, rdd: RDD[Genotype]): GenotypeDataset

72. #### implicit def fragmentsToGenotypesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Genotype]): GenotypeDataset

73. #### implicit def fragmentsToReadsConversionFn(gDataset: FragmentDataset, rdd: RDD[Read]): ReadDataset

74. #### implicit def fragmentsToReadsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Read]): ReadDataset

75. #### implicit def fragmentsToSequencesConversionFn(gDataset: FragmentDataset, rdd: RDD[Sequence]): SequenceDataset

76. #### implicit def fragmentsToSequencesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Sequence]): SequenceDataset

77. #### implicit def fragmentsToSlicesConversionFn(gDataset: FragmentDataset, rdd: RDD[Slice]): SliceDataset

78. #### implicit def fragmentsToSlicesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Slice]): SliceDataset

79. #### implicit def fragmentsToVariantContextConversionFn(gDataset: FragmentDataset, rdd: RDD[VariantContext]): VariantContextDataset

80. #### implicit def fragmentsToVariantsConversionFn(gDataset: FragmentDataset, rdd: RDD[Variant]): VariantDataset

81. #### implicit def fragmentsToVariantsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Variant]): VariantDataset

82. #### implicit def genericToAlignmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Alignment]): AlignmentDataset

83. #### implicit def genericToCoverageConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Coverage]): CoverageDataset

84. #### implicit def genericToFeatureConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Feature]): FeatureDataset

85. #### implicit def genericToFragmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Fragment]): FragmentDataset

86. #### implicit def genericToGenotypesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Genotype]): GenotypeDataset

87. #### implicit def genericToReadsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Read]): ReadDataset

88. #### implicit def genericToSequencesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Sequence]): SequenceDataset

89. #### implicit def genericToSlicesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Slice]): SliceDataset

90. #### implicit def genericToVariantContextsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[VariantContext]): VariantContextDataset

91. #### implicit def genericToVariantsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Variant]): VariantDataset

92. #### implicit def genotypesToAlignmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Alignment]): AlignmentDataset

93. #### implicit def genotypesToAlignmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Alignment]): AlignmentDataset

94. #### implicit def genotypesToCoverageConversionFn(gDataset: GenotypeDataset, rdd: RDD[Coverage]): CoverageDataset

95. #### implicit def genotypesToCoverageDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Coverage]): CoverageDataset

96. #### implicit def genotypesToFeaturesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Feature]): FeatureDataset

97. #### implicit def genotypesToFeaturesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Feature]): FeatureDataset

98. #### implicit def genotypesToFragmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Fragment]): FragmentDataset

99. #### implicit def genotypesToFragmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Fragment]): FragmentDataset

100. #### implicit def genotypesToGenotypesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Genotype]): GenotypeDataset

101. #### implicit def genotypesToReadsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Read]): ReadDataset

102. #### implicit def genotypesToReadsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Read]): ReadDataset

103. #### implicit def genotypesToSequencesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Sequence]): SequenceDataset

104. #### implicit def genotypesToSequencesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Sequence]): SequenceDataset

105. #### implicit def genotypesToSlicesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Slice]): SliceDataset

106. #### implicit def genotypesToSlicesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Slice]): SliceDataset

107. #### implicit def genotypesToVariantContextConversionFn(gDataset: GenotypeDataset, rdd: RDD[VariantContext]): VariantContextDataset

108. #### implicit def genotypesToVariantsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Variant]): VariantDataset

109. #### implicit def genotypesToVariantsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Variant]): VariantDataset

110. #### final def getClass(): Class[_]

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111. #### def hashCode(): Int

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112. #### final def isInstanceOf[T0]: Boolean

     Definition Classes
       Any

113. #### final def ne(arg0: AnyRef): Boolean

     Definition Classes
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114. #### final def notify(): Unit

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115. #### final def notifyAll(): Unit

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116. #### implicit def readsToAlignmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Alignment]): AlignmentDataset

117. #### implicit def readsToAlignmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Alignment]): AlignmentDataset

118. #### implicit def readsToCoverageConversionFn(gDataset: ReadDataset, rdd: RDD[Coverage]): CoverageDataset

119. #### implicit def readsToCoverageDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Coverage]): CoverageDataset

120. #### implicit def readsToFeaturesConversionFn(gDataset: ReadDataset, rdd: RDD[Feature]): FeatureDataset

121. #### implicit def readsToFeaturesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Feature]): FeatureDataset

122. #### implicit def readsToFragmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Fragment]): FragmentDataset

123. #### implicit def readsToFragmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Fragment]): FragmentDataset

124. #### implicit def readsToGenotypesConversionFn(gDataset: ReadDataset, rdd: RDD[Genotype]): GenotypeDataset

125. #### implicit def readsToGenotypesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Genotype]): GenotypeDataset

126. #### implicit def readsToReadsConversionFn(gDataset: ReadDataset, rdd: RDD[Read]): ReadDataset

127. #### implicit def readsToSequencesConversionFn(gDataset: ReadDataset, rdd: RDD[Sequence]): SequenceDataset

128. #### implicit def readsToSequencesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Sequence]): SequenceDataset

129. #### implicit def readsToSlicesConversionFn(gDataset: ReadDataset, rdd: RDD[Slice]): SliceDataset

130. #### implicit def readsToSlicesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Slice]): SliceDataset

131. #### implicit def readsToVariantContextsConversionFn(gDataset: ReadDataset, rdd: RDD[VariantContext]): VariantContextDataset

132. #### implicit def readsToVariantsConversionFn(gDataset: ReadDataset, rdd: RDD[Variant]): VariantDataset

133. #### implicit def readsToVariantsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Variant]): VariantDataset

134. #### implicit def recordToRichRecord(record: Alignment): RichAlignment

135. #### implicit def sequencesToAlignmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Alignment]): AlignmentDataset

136. #### implicit def sequencesToAlignmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Alignment]): AlignmentDataset

137. #### implicit def sequencesToCoverageConversionFn(gDataset: SequenceDataset, rdd: RDD[Coverage]): CoverageDataset

138. #### implicit def sequencesToCoverageDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Coverage]): CoverageDataset

139. #### implicit def sequencesToFeaturesConversionFn(gDataset: SequenceDataset, rdd: RDD[Feature]): FeatureDataset

140. #### implicit def sequencesToFeaturesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Feature]): FeatureDataset

141. #### implicit def sequencesToFragmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Fragment]): FragmentDataset

142. #### implicit def sequencesToFragmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Fragment]): FragmentDataset

143. #### implicit def sequencesToGenotypesConversionFn(gDataset: SequenceDataset, rdd: RDD[Genotype]): GenotypeDataset

144. #### implicit def sequencesToGenotypesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Genotype]): GenotypeDataset

145. #### implicit def sequencesToReadsConversionFn(gDataset: SequenceDataset, rdd: RDD[Read]): ReadDataset

146. #### implicit def sequencesToReadsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Read]): ReadDataset

147. #### implicit def sequencesToSequencesConversionFn(gDataset: SequenceDataset, rdd: RDD[Sequence]): SequenceDataset

148. #### implicit def sequencesToSlicesConversionFn(gDataset: SequenceDataset, rdd: RDD[Slice]): SliceDataset

149. #### implicit def sequencesToSlicesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Slice]): SliceDataset

150. #### implicit def sequencesToVariantContextsConversionFn(gDataset: SequenceDataset, rdd: RDD[VariantContext]): VariantContextDataset

151. #### implicit def sequencesToVariantsConversionFn(gDataset: SequenceDataset, rdd: RDD[Variant]): VariantDataset

152. #### implicit def sequencesToVariantsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Variant]): VariantDataset

153. #### implicit def slicesToAlignmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Alignment]): AlignmentDataset

154. #### implicit def slicesToAlignmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Alignment]): AlignmentDataset

155. #### implicit def slicesToCoverageConversionFn(gDataset: SliceDataset, rdd: RDD[Coverage]): CoverageDataset

156. #### implicit def slicesToCoverageDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Coverage]): CoverageDataset

157. #### implicit def slicesToFeaturesConversionFn(gDataset: SliceDataset, rdd: RDD[Feature]): FeatureDataset

158. #### implicit def slicesToFeaturesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Feature]): FeatureDataset

159. #### implicit def slicesToFragmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Fragment]): FragmentDataset

160. #### implicit def slicesToFragmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Fragment]): FragmentDataset

161. #### implicit def slicesToGenotypesConversionFn(gDataset: SliceDataset, rdd: RDD[Genotype]): GenotypeDataset

162. #### implicit def slicesToGenotypesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Genotype]): GenotypeDataset

163. #### implicit def slicesToReadsConversionFn(gDataset: SliceDataset, rdd: RDD[Read]): ReadDataset

164. #### implicit def slicesToReadsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Read]): ReadDataset

165. #### implicit def slicesToSequencesConversionFn(gDataset: SliceDataset, rdd: RDD[Sequence]): SequenceDataset

166. #### implicit def slicesToSequencesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Sequence]): SequenceDataset

167. #### implicit def slicesToSlicesConversionFn(gDataset: SliceDataset, rdd: RDD[Slice]): SliceDataset

168. #### implicit def slicesToVariantContextsConversionFn(gDataset: SliceDataset, rdd: RDD[VariantContext]): VariantContextDataset

169. #### implicit def slicesToVariantsConversionFn(gDataset: SliceDataset, rdd: RDD[Variant]): VariantDataset

170. #### implicit def slicesToVariantsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Variant]): VariantDataset

171. #### implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

172. #### final def synchronized[T0](arg0: ⇒ T0): T0

     Definition Classes
       AnyRef

173. #### def toString(): String

     Definition Classes
       AnyRef → Any

174. #### implicit def variantContextsToAlignmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Alignment]): AlignmentDataset

175. #### implicit def variantContextsToCoverageConversionFn(gDataset: VariantContextDataset, rdd: RDD[Coverage]): CoverageDataset

176. #### implicit def variantContextsToFeaturesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Feature]): FeatureDataset

177. #### implicit def variantContextsToFragmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Fragment]): FragmentDataset

178. #### implicit def variantContextsToGenotypesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Genotype]): GenotypeDataset

179. #### implicit def variantContextsToReadsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Read]): ReadDataset

180. #### implicit def variantContextsToSequencesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Sequence]): SequenceDataset

181. #### implicit def variantContextsToSlicesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Slice]): SliceDataset

182. #### implicit def variantContextsToVariantContextsConversionFn(gDataset: VariantContextDataset, rdd: RDD[VariantContext]): VariantContextDataset

183. #### implicit def variantContextsToVariantsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Variant]): VariantDataset

184. #### implicit def variantsToAlignmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Alignment]): AlignmentDataset

185. #### implicit def variantsToAlignmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Alignment]): AlignmentDataset

186. #### implicit def variantsToCoverageConversionFn(gDataset: VariantDataset, rdd: RDD[Coverage]): CoverageDataset

187. #### implicit def variantsToCoverageDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Coverage]): CoverageDataset

188. #### implicit def variantsToFeaturesConversionFn(gDataset: VariantDataset, rdd: RDD[Feature]): FeatureDataset

189. #### implicit def variantsToFeaturesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Feature]): FeatureDataset

190. #### implicit def variantsToFragmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Fragment]): FragmentDataset

191. #### implicit def variantsToFragmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Fragment]): FragmentDataset

192. #### implicit def variantsToGenotypesConversionFn(gDataset: VariantDataset, rdd: RDD[Genotype]): GenotypeDataset

193. #### implicit def variantsToGenotypesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Genotype]): GenotypeDataset

194. #### implicit def variantsToReadsConversionFn(gDataset: VariantDataset, rdd: RDD[Read]): ReadDataset

195. #### implicit def variantsToReadsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Read]): ReadDataset

196. #### implicit def variantsToSequencesConversionFn(gDataset: VariantDataset, rdd: RDD[Sequence]): SequenceDataset

197. #### implicit def variantsToSequencesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Sequence]): SequenceDataset

198. #### implicit def variantsToSlicesConversionFn(gDataset: VariantDataset, rdd: RDD[Slice]): SliceDataset

199. #### implicit def variantsToSlicesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Slice]): SliceDataset

200. #### implicit def variantsToVariantContextConversionFn(gDataset: VariantDataset, rdd: RDD[VariantContext]): VariantContextDataset

201. #### implicit def variantsToVariantsConversionFn(gDataset: VariantDataset, rdd: RDD[Variant]): VariantDataset

202. #### final def wait(): Unit

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203. #### final def wait(arg0: Long, arg1: Int): Unit

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204. #### final def wait(arg0: Long): Unit

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### Inherited from Serializable

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