org.bdgenomics.adam.rdd

# fragment

#### package fragment

Visibility

1. Public
2. All

### Type Members

1. #### case class DatasetBoundFragmentDataset extends FragmentDataset with DatasetBoundGenomicDataset[Fragment, Fragment, FragmentDataset] with Product with Serializable

2. #### sealed abstract class FragmentDataset extends AvroReadGroupGenomicDataset[Fragment, Fragment, FragmentDataset]

3. #### class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging

4. #### case class ParquetUnboundFragmentDataset extends FragmentDataset with Product with Serializable

5. #### case class RDDBoundFragmentDataset extends FragmentDataset with Product with Serializable

6. #### class Tab5InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Logging

7. #### class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging

### Value Members

1. #### object FragmentDataset

   Helper singleton object for building FragmentDatasets.

2. #### object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

3. #### object Tab5InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

4. #### object Tab6InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

### Ungrouped