DNAAlphabet
models
DatasetBoundAlignmentRecordRDD
read
DatasetBoundCoverageRDD
feature
DatasetBoundFeatureRDD
feature
DatasetBoundFragmentRDD
fragment
DatasetBoundGenericGenomicDataset
rdd
DatasetBoundGenomicDataset
rdd
DatasetBoundGenotypeRDD
variant
DatasetBoundNucleotideContigFragmentRDD
contig
DatasetBoundVariantContextRDD
variant
DatasetBoundVariantRDD
variant
Dbxref
sql
DbxrefField
projections
DefaultHeaderLines
converters
Delete
MdTagEvent
dataset
DatasetBoundGenericGenomicDataset GenomicDataset RDDBoundGenericGenomicDataset DatasetBoundNucleotideContigFragmentRDD ParquetUnboundNucleotideContigFragmentRDD RDDBoundNucleotideContigFragmentRDD DatasetBoundCoverageRDD DatasetBoundFeatureRDD ParquetUnboundCoverageRDD ParquetUnboundFeatureRDD RDDBoundCoverageRDD RDDBoundFeatureRDD DatasetBoundFragmentRDD ParquetUnboundFragmentRDD RDDBoundFragmentRDD DatasetBoundAlignmentRecordRDD ParquetUnboundAlignmentRecordRDD RDDBoundAlignmentRecordRDD DatasetBoundGenotypeRDD DatasetBoundVariantContextRDD DatasetBoundVariantRDD ParquetUnboundGenotypeRDD ParquetUnboundVariantRDD RDDBoundGenotypeRDD RDDBoundVariantContextRDD RDDBoundVariantRDD
db
DbxrefField OntologyTermField Dbxref OntologyTerm
dbSnp
DefaultHeaderLines VariantAnnotationField VariantAnnotation
dbxrefs
FeatureField Feature
decoder
InputStreamWithDecoder
deferMerging
ADAMSaveAnyArgs
deletedBase
MdTag
deletions
MdTag
derivesFrom
FeatureField Feature
description
RecordGroup NucleotideContigFragmentField ReadField RecordGroupField SequenceField SliceField NucleotideContigFragment ProcessingStep
disableFastConcat
ADAMSaveAnyArgs
disorient
ReferenceRegion
distance
ReferenceRegion TranscriptEffectField TranscriptEffect
dna
Alphabet
downsampled
VariantCallingAnnotationsField VariantCallingAnnotations
duplicateRead
AlignmentRecordField AlignmentRecord