# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Aug 13 09:12:45 2024
# ------------------------------------------------

package:
  name: spades
  version: 4.0.0
source:
  patches:
    - 0001-change-verbosity-remove-expr.patch
  sha256: 07c02eb1d9d90f611ac73bdd30ddc242ed51b00c8a3757189e8a8137ad8cfb8b
  url: https://github.com/ablab/spades/releases/download/v4.0.0/SPAdes-4.0.0.tar.gz
build:
  number: '3'
  run_exports:
    - spades >=4.0.0,<5.0a0
  string: hf9a8d21_3
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_16
    - binutils_impl_linux-aarch64 2.40 hf54a868_7
    - binutils_linux-aarch64 2.40 h1f91aba_0
    - bzip2 1.0.8 h68df207_7
    - c-ares 1.32.3 h68df207_0
    - ca-certificates 2024.7.4 hcefe29a_0
    - cmake 3.30.2 h7042e5d_0
    - gcc_impl_linux-aarch64 12.4.0 hfb8d6db_0
    - gcc_linux-aarch64 12.4.0 heb3b579_0
    - gxx_impl_linux-aarch64 12.4.0 h3c1ec91_0
    - gxx_linux-aarch64 12.4.0 h3f57e68_0
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_16
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.3 h50a48e9_0
    - ld_impl_linux-aarch64 2.40 h9fc2d93_7
    - libcurl 8.9.1 hfa30633_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h31becfc_2
    - libexpat 2.6.2 h2f0025b_0
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 12.4.0 h7b3af7c_100
    - libgcc-ng 14.1.0 he277a41_0
    - libglib 2.80.3 haee52c6_2
    - libgomp 14.1.0 he277a41_0
    - libiconv 1.17 h31becfc_2
    - libnghttp2 1.58.0 hb0e430d_1
    - libsanitizer 12.4.0 h469570c_0
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 12.4.0 h7b3af7c_100
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libuv 1.48.0 h31becfc_0
    - libzlib 1.3.1 h68df207_1
    - make 4.3 h309ac5b_1
    - ncurses 6.5 h0425590_0
    - openssl 3.3.1 h68df207_2
    - pcre2 10.44 h070dd5b_2
    - pkg-config 0.29.2 hce167ba_1009
    - rhash 1.4.4 h31becfc_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_16
    - tzdata 2024a h0c530f3_0
    - xz 5.2.6 h9cdd2b7_0
    - zstd 1.5.6 h02f22dd_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h68df207_7
    - libgcc-ng 14.1.0 he277a41_0
    - libgomp 14.1.0 he277a41_0
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libzlib 1.2.13 h68df207_6
    - zlib 1.2.13 h68df207_6
  run:
    - _openmp_mutex >=4.5
    - bzip2 >=1.0.8,<2.0a0
    - libgcc-ng >=12
    - libgomp
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<2.0a0
    - python >=3.8
test:
  commands:
    - spades.py --version 2>&1 | grep 4.0.0
    - rnaspades.py --version 2>&1 | grep 4.0.0
    - metaspades.py --version 2>&1 | grep 4.0.0
    - plasmidspades.py --version 2>&1 | grep 4.0.0
    - spades-kmercount -h 2>&1 | grep spades-kmercount
    - spades-gmapper 2>&1 | grep spades-gmapper
    - spades-gbuilder 2>&1 | grep spades-gbuilder
    - spades.py --test && rm -rf spades_test
about:
  description: 'SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm
    which was designed for

    single cell and multi-cells bacterial data sets. However, it might not be suitable
    for large

    genomes projects.


    SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end,
    mate-pairs and

    single reads.

    '
  dev_url: https://github.com/ablab/spades
  doc_url: https://ablab.github.io/spades
  home: https://github.com/ablab/spades
  license: GPL-2.0-only
  license_family: GPL
  license_file: LICENSE
  summary: SPAdes (St. Petersburg genome assembler) is intended for both standard
    isolates and single-cell MDA bacteria assemblies.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:spades
    - doi:10.1089/cmb.2012.0021
    - doi:10.1093/bioinformatics/btz349
    - doi:10.1093/gigascience/giz100
    - doi:10.1101/gr.213959.116
    - usegalaxy-eu:spades
  recipe-maintainers:
    - chrisjackson-pellicle
    - druvus
    - notestaff
