# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jul 16 06:57:58 2024
# ------------------------------------------------

package:
  name: r-stitch
  version: 1.6.11
source:
  - sha256: eb6a8e121eb9689597da9ec5a105ba5392e458ab30510fe26b260b81a6d9fdb0
    url: https://github.com/rwdavies/stitch/releases/download/1.6.11/STITCH_1.6.11.tar.gz
  - sha256: 0c61d79cf519e5c5ae33807725577da3d1599bcc89413c3a6bce3fb7c99090c7
    url: https://raw.githubusercontent.com/rwdavies/STITCH/1.6.11/STITCH.R
build:
  number: '0'
  run_exports:
    - r-stitch >=1.6.11,<2.0a0
  string: r43hdebfcb7_0
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_16
    - autoconf 2.71 pl5321h2148fe1_1
    - automake 1.16.5 pl5321h8af1aa0_0
    - binutils_impl_linux-aarch64 2.40 hf54a868_7
    - binutils_linux-aarch64 2.40 h1f91aba_9
    - bzip2 1.0.8 h68df207_7
    - gcc_impl_linux-aarch64 12.3.0 h3d98823_13
    - gcc_linux-aarch64 12.3.0 ha52a6ea_9
    - gxx_impl_linux-aarch64 12.3.0 hba91e99_13
    - gxx_linux-aarch64 12.3.0 h9d1f256_9
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_16
    - ld_impl_linux-aarch64 2.40 h9fc2d93_7
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 12.3.0 h6144e03_113
    - libgcc-ng 14.1.0 he277a41_0
    - libglib 2.80.3 haee52c6_1
    - libgomp 14.1.0 he277a41_0
    - libiconv 1.17 h31becfc_2
    - libsanitizer 12.3.0 h57e2e72_13
    - libstdcxx-devel_linux-aarch64 12.3.0 h6144e03_113
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libxcrypt 4.4.36 h31becfc_1
    - libzlib 1.3.1 h68df207_1
    - m4 1.4.18 h516909a_1001
    - make 4.3 h309ac5b_1
    - pcre2 10.44 h070dd5b_0
    - perl 5.32.1 7_h31becfc_perl5
    - pkg-config 0.29.2 hce167ba_1009
    - sysroot_linux-aarch64 2.17 h5b4a56d_16
    - tzdata 2024a h0c530f3_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_16
    - binutils_impl_linux-aarch64 2.40 hf54a868_7
    - bwidget 1.9.14 h8af1aa0_1
    - bzip2 1.0.8 h68df207_7
    - c-ares 1.32.2 h68df207_0
    - ca-certificates 2024.7.4 hcefe29a_0
    - cairo 1.18.0 ha13f110_0
    - curl 8.8.0 h7daf2e0_1
    - expat 2.6.2 h2f0025b_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_2
    - fontconfig 2.14.2 ha9a116f_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hf0a5ef3_2
    - fribidi 1.0.10 hb9de7d4_0
    - gcc_impl_linux-aarch64 14.1.0 h21755a0_0
    - gfortran_impl_linux-aarch64 14.1.0 h6c2f851_0
    - gmp 6.3.0 h0a1ffab_2
    - graphite2 1.3.13 h2f0025b_1003
    - gxx_impl_linux-aarch64 14.1.0 h2213b8a_0
    - harfbuzz 9.0.0 h9812418_0
    - icu 73.2 h787c7f5_0
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_16
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.3 h50a48e9_0
    - ld_impl_linux-aarch64 2.40 h9fc2d93_7
    - lerc 4.0.0 h4de3ea5_0
    - libblas 3.9.0 6_ha7e5223_netlib
    - libcurl 8.8.0 h4e8248e_1
    - libdeflate 1.20 h31becfc_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h31becfc_2
    - libexpat 2.6.2 h2f0025b_0
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 14.1.0 h8373c25_100
    - libgcc-ng 14.1.0 he277a41_0
    - libgfortran-ng 14.1.0 he9431aa_0
    - libgfortran5 14.1.0 h9420597_0
    - libglib 2.80.2 h34bac0b_0
    - libgomp 14.1.0 he277a41_0
    - libiconv 1.17 h31becfc_2
    - libjpeg-turbo 3.0.0 h31becfc_1
    - liblapack 3.9.0 6_ha7e5223_netlib
    - libnghttp2 1.58.0 hb0e430d_1
    - libpng 1.6.43 h194ca79_0
    - libsanitizer 14.1.0 h1bb4367_0
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 14.1.0 h8373c25_100
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libtiff 4.6.0 hf980d43_3
    - libuuid 2.38.1 hb4cce97_0
    - libwebp-base 1.4.0 h31becfc_0
    - libxcb 1.15 h2a766a3_0
    - libzlib 1.2.13 h68df207_6
    - make 4.3 h309ac5b_1
    - mpc 1.3.1 hf4c8f4c_0
    - mpfr 4.2.1 ha2d0fc4_1
    - ncurses 6.5 h0425590_0
    - openssl 3.3.1 h68df207_1
    - pango 1.54.0 h7579590_1
    - pcre2 10.43 hd0f9c67_0
    - pixman 0.43.4 h2f0025b_0
    - pthread-stubs 0.4 hb9de7d4_1001
    - r-assertthat 0.2.1 r43hc72bb7e_5
    - r-base 4.3.3 h14488e9_1
    - r-brio 1.1.5 r43hc1cf72c_1
    - r-callr 3.7.6 r43hc72bb7e_1
    - r-cli 3.6.3 r43h6170684_0
    - r-crayon 1.5.3 r43hc72bb7e_1
    - r-data.table 1.15.2 r43hb4ebc13_0
    - r-desc 1.4.3 r43hc72bb7e_0
    - r-diffobj 0.3.5 r43hc1cf72c_3
    - r-digest 0.6.36 r43h6170684_1
    - r-ellipsis 0.3.2 r43hc1cf72c_3
    - r-evaluate 0.24.0 r43hc72bb7e_1
    - r-fansi 1.0.6 r43hc1cf72c_1
    - r-fs 1.6.4 r43h6170684_1
    - r-glue 1.7.0 r43hc1cf72c_1
    - r-jsonlite 1.8.8 r43hc1cf72c_1
    - r-lifecycle 1.0.4 r43hc72bb7e_0
    - r-magrittr 2.0.3 r43hc1cf72c_3
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgbuild 1.4.4 r43hc72bb7e_0
    - r-pkgconfig 2.0.3 r43hc72bb7e_4
    - r-pkgload 1.3.4 r43hc72bb7e_0
    - r-praise 1.0.0 r43hc72bb7e_1008
    - r-prettyunits 1.2.0 r43hc72bb7e_1
    - r-processx 3.8.4 r43hc1cf72c_1
    - r-ps 1.7.7 r43hc1cf72c_0
    - r-r6 2.5.1 r43hc72bb7e_3
    - r-rcpp 1.0.12 r43h6170684_1
    - r-rcpparmadillo 14.0.0_1 r43h5da6ed8_1
    - r-rematch2 2.1.2 r43hc72bb7e_3
    - r-rlang 1.1.4 r43h6170684_1
    - r-rprojroot 2.0.4 r43hc72bb7e_1
    - r-rrbgen 0.0.6 r43h78569d1_11
    - r-testthat 3.2.1.1 r43h93f32a7_0
    - r-tibble 3.2.1 r43h25e906a_2
    - r-utf8 1.2.4 r43hc1cf72c_1
    - r-vctrs 0.6.5 r43h93f32a7_0
    - r-waldo 0.5.2 r43hc72bb7e_0
    - r-withr 3.0.0 r43hc72bb7e_1
    - readline 8.2 h8fc344f_1
    - sed 4.8 ha0d5d3d_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_16
    - tk 8.6.13 h194ca79_0
    - tktable 2.10 h52f7bd3_6
    - tzdata 2024a h0c530f3_0
    - xorg-kbproto 1.0.7 h3557bc0_1002
    - xorg-libice 1.1.1 h7935292_0
    - xorg-libsm 1.2.4 h5a01bc2_0
    - xorg-libx11 1.8.9 h055a233_0
    - xorg-libxau 1.0.11 h31becfc_0
    - xorg-libxdmcp 1.1.3 h3557bc0_0
    - xorg-libxext 1.3.4 h2a766a3_2
    - xorg-libxrender 0.9.11 h7935292_0
    - xorg-libxt 1.3.0 h7935292_1
    - xorg-renderproto 0.11.1 h3557bc0_1002
    - xorg-xextproto 7.3.0 h2a766a3_1003
    - xorg-xproto 7.0.31 h3557bc0_1007
    - xz 5.2.6 h9cdd2b7_0
    - zlib 1.2.13 h68df207_6
    - zstd 1.5.6 h02f22dd_0
  run:
    - gmp >=6.3.0,<7.0a0
    - htslib >=1.4
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<2.0a0
    - mpc >=1.1.0
    - mpc >=1.3.1,<2.0a0
    - mpfr >=4.2.1,<5.0a0
    - r-base >=4.3,<4.4.0a0
    - r-data.table >=1.11.8
    - r-optparse
    - r-rcpp >=0.12.18
    - r-rcpparmadillo >=0.8.600.0.0
    - r-rrbgen >=0.0.6
    - r-rrbgen >=0.0.6,<0.1.0a0
    - r-testthat >=2.0.0
    - rsync
    - samtools >=1.4
    - xz >=5.2.6,<6.0a0
    - zlib
test:
  commands:
    - $R -e "library('STITCH');  testthat::test_package('STITCH', stop_on_failure
      = TRUE, stop_on_warning = TRUE, filter = 'acceptance-one', reporter = 'summary')"
    - STITCH.R --help
about:
  dev_url: https://github.com/rwdavies/stitch
  doc_url: https://github.com/rwdavies/stitch
  home: https://github.com/rwdavies/stitch
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: STITCH - Sequencing To Imputation Through Constructing Haplotypes
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - rwdavies
