Package: QUILT
Type: Package
Title: QUILT
Version: 2.0.3
Date: 2025-06-11
Authors@R: c(
    person("Robert", "Davies", , "robertwilliamdavies@gmail.com", role = c("aut", "cre")),
    person("Zilong", "Li", , "zilong.dk@gmail.com", role = c("aut"))
           )
Description: QUILT2 is an R and C++ program for fast genotype calling from sequencing reads using a large reference panel. QUILT2 is accurate and versatile, able to handle imputation from short read, long read, ancient DNA and cell-free DNA from NIPT.
Installation: To install, first install dependencies, then run the
        install.packages command, pointing to the downloaded tarball
        (QUILT.tar.gz)
Getting started: Please see github README.
Depends: R (>= 4.0.0), STITCH (>= 1.8.1), mspbwt (>= 0.1.0), data.table
Remotes: rwdavies/STITCH/STITCH, rwdavies/mspbwt/mspbwt
Imports: Rcpp
LinkingTo: Rcpp, RcppArmadillo, RcppEigen (>= 0.3.4.0.0)
RoxygenNote: 7.3.2
License: GPL | file LICENSE
SystemRequirements: C++17
NeedsCompilation: yes
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Author: Robert Davies [aut, cre],
  Zilong Li [aut]
Maintainer: Robert Davies <robertwilliamdavies@gmail.com>
Built: R 4.4.2; aarch64-conda-linux-gnu; 2025-06-12 16:20:31 UTC; unix
