Package: LncPipeReporter
Type: Package
Title: Automatically Aggregating and Summarizing lncRNA Analysis
        Results for Interactive Report
Version: 0.1.0
Authors@R: as.person(c(
    "Yu Sun <sun_yu@mail.nankai.edu.cn> [aut, cre]", 
    "Qi Zhao <zhaoqi@sysucc.org.cn> [aut]"
  ))
URL: https://github.com/bioinformatist/LncPipe-Reporter
BugReports: https://github.com/bioinformatist/LncPipe-Reporter/issues
Description: This project is a part of LncPipe that take charge of automatically generating reports in HTML format with interactive plots based on pipeline output.
    It contains several ploting functions as well as analysis scripts to perform comparison analysis and differential expression analysis when experimental design information was available.
    We speculated this tools can facilitate understanding the underlining machanism of known and novel lncRNAs in their expriment.
License: file LICENSE
Encoding: UTF-8
LazyData: true
Imports: plotly, data.table, ggsci, heatmaply, edgeR, knitr,
        flexdashboard, ggbiplot, DT, cowplot, ggplot2, htmlwidgets,
        rmarkdown, NOISeq, DESeq2
biocViews: Software
Remotes: vqv/ggbiplot
RoxygenNote: 6.0.1
Roxygen: list(markdown = TRUE)
Suggests: testthat, covr
Author: Yu Sun [aut, cre],
  Qi Zhao [aut]
Maintainer: Yu Sun <sun_yu@mail.nankai.edu.cn>
Built: R 4.4.2; ; 2025-03-13 04:59:23 UTC; unix
