Package: BPCells
Title: Single Cell Counts Matrices to PCA
Version: 0.3.1
Authors@R: c(
    person(given = "Benjamin",
           family = "Parks",
           role = c("aut", "cre", "cph"),
           email = "bparks@alumni.stanford.edu",
           comment = c(ORCID = "0000-0002-0261-7472")),
    person("Immanuel", "Abdi", role = "aut"),
    person("Stanford University", role=c("cph", "fnd")),
    person("Genentech, Inc.", role=c("cph", "fnd")))
Description: > Efficient operations for single cell ATAC-seq fragments and
    RNA counts matrices. Interoperable with standard file formats, and introduces
    efficient bit-packed formats that allow large storage savings and increased
    read speeds.
License: Apache-2.0 or MIT
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
URL: https://bnprks.github.io/BPCells,
        https://github.com/bnprks/BPCells
LinkingTo: Rcpp, RcppEigen
Imports: methods, grDevices, magrittr, Matrix, Rcpp, rlang, tools,
        vctrs, lifecycle, stringr, tibble, dplyr (>= 1.0.0), tidyr,
        readr, ggplot2 (>= 3.4.0), scales, patchwork, scattermore,
        ggrepel, RColorBrewer, hexbin
Suggests: IRanges, GenomicRanges, matrixStats, igraph
Depends: R (>= 4.0.0)
Config/Needs/website: pkgdown, devtools, uwot, irlba, RcppHNSW, igraph,
        BiocManager, bioc::BSgenome.Hsapiens.UCSC.hg38,
        github::GreenleafLab/motifmatchr,
        github::GreenleafLab/chromVARmotifs, png, magrittr
Author: Benjamin Parks [aut, cre, cph]
    (<https://orcid.org/0000-0002-0261-7472>),
  Immanuel Abdi [aut],
  Stanford University [cph, fnd],
  Genentech, Inc. [cph, fnd]
Maintainer: Benjamin Parks <bparks@alumni.stanford.edu>
Built: R 4.4.3; aarch64-conda-linux-gnu; 2025-07-22 00:08:34 UTC; unix
