recipe_sha: e081ddfcb312d17f3886fad07d2492cab6b0e0716c61e66c83e271766d9ebfdf  # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
  In file included from src/PhyloAcc-GT/bpp_c.hpp:27:
  /opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/_build_env/bin/../include/c/v1/set:741:30: warning: the specified comparator type does not provide a viable const call operator [-Wuser-defined-warnings]
          static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
                               ^
  src/PhyloAcc-GT//genetree.cpp:316:37: note: in instantiation of member function 'std::set<std::pair<int, double>, Cmp>::~set' requested here
          set<pair<int, double>, Cmp> tocoal;
                                      ^
  /opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/_build_env/bin/../include/c/v1/__tree:994:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator<std::pair<int, double>, Cmp>':
      _LIBCPP_DIAGNOSE_WARNING(!__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
      ^                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/_build_env/bin/../include/c/v1/__config:1322:58: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
  #    define _LIBCPP_DIAGNOSE_WARNING(...) __attribute__((__diagnose_if__(__VA_ARGS__, "warning")))
                                                           ^               ~~~~~~~~~~~
  7 warnings generated.
  In file included from src/PhyloAcc-GT//main.cpp:26:
  src/PhyloAcc-GT/bpp_c.hpp:223:13: warning: unused variable 'tot' [-Wunused-variable]
          int tot = ceil((double)(GG - 15)/GG_block);
              ^
  1 warning generated.
  dyld[53487]: Library not loaded: @rpath/libLLVM-16.dylib
    Referenced from: <7C18778E-BF33-3AEA-A118-E46B35B5996F> /opt/mambaforge/envs/bioconda/pkgs/llvm-tools-16.0.6-hbedff68_3/bin/dsymutil
    Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/llvm-tools-16.0.6-hbedff68_3/bin/../lib/libLLVM-16.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/llvm-tools-16.0.6-hbedff68_3/bin/../lib/libLLVM-16.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/llvm-tools-16.0.6-hbedff68_3/bin/../lib/libLLVM-16.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/llvm-tools-16.0.6-hbedff68_3/bin/../lib/libLLVM-16.dylib' (no such file), '/usr/local/lib/libLLVM-16.dylib' (no such file), '/usr/lib/libLLVM-16.dylib' (no such file, not in dyld cache)
  clang-16: error: unable to execute command: Abort trap: 6
  clang-16: error: dsymutil command failed due to signal (use -v to see invocation)
  make: *** [Makefile:49: PhyloAcc-GT] Error 1
  Extracting download
  Traceback (most recent call last):
  source tree in: /opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/work
    File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in <module>
  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place
  export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/_build_env
  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/work
  INFO: activate_clang_osx-64.sh made the following environmental changes:
  AR=x86_64-apple-darwin13.4.0-ar
  AS=x86_64-apple-darwin13.4.0-as
  CC=x86_64-apple-darwin13.4.0-clang
  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
      sys.exit(execute())
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 590, in execute
  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/phyloacc-2.3.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
      api.build(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build
  CLANG=x86_64-apple-darwin13.4.0-clang
      return build_tree(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree
  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.13 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
  CMAKE_PREFIX_PATH=:$PREFIX
  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.13
  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/phyloacc-2.3.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  HOST=x86_64-apple-darwin13.4.0
  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
  LD=x86_64-apple-darwin13.4.0-ld
  LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
  LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
  LIPO=x86_64-apple-darwin13.4.0-lipo
  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
  NM=x86_64-apple-darwin13.4.0-nm
  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
  OBJC=x86_64-apple-darwin13.4.0-clang
      packages_from_this = build(
  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
  OTOOL=x86_64-apple-darwin13.4.0-otool
  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2506, in build
      utils.check_call_env(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 405, in check_call_env
      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 381, in _func_defaulting_env_to_os_environ
      raise subprocess.CalledProcessError(proc.returncode, _args)
  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/phyloacc_1718294848149/work/conda_build.sh']' returned non-zero exit status 2.
  RANLIB=x86_64-apple-darwin13.4.0-ranlib
  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
  SDKROOT=/Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk
  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
  SIZE=x86_64-apple-darwin13.4.0-size
  STRINGS=x86_64-apple-darwin13.4.0-strings
  STRIP=x86_64-apple-darwin13.4.0-strip
  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
  ac_cv_func_malloc_0_nonnull=yes
  ac_cv_func_realloc_0_nonnull=yes
  build_alias=x86_64-apple-darwin13.4.0
  host_alias=x86_64-apple-darwin13.4.0
  INFO: activate_clangxx_osx-64.sh made the following environmental changes:
  CLANGXX=x86_64-apple-darwin13.4.0-clang
  CXX=x86_64-apple-darwin13.4.0-clang
  CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/phyloacc-2.3.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
  DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/phyloacc-2.3.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  $CXX is [x86_64-apple-darwin13.4.0-clang]
  $PREFIX is [$PREFIX]
  $GSL_INCLUDE is [$PREFIX/include/]
  $GSL_LIB is [$PREFIX/lib/]
  x86_64-apple-darwin13.4.0-clang -Wall -g -O2 -std=c11 -I$PREFIX/include/ -L$PREFIX/lib/ src/PhyloAcc-ST//*.cpp -o PhyloAcc-ST -lgsl -lm -lgslcblas -larmadillo -fopenmp
  x86_64-apple-darwin13.4.0-clang -Wall -g -O2 -std=c11 -I$PREFIX/include/ -L$PREFIX/lib/ src/PhyloAcc-GT//*.cpp -o PhyloAcc-GT -lgsl -lm -lgslcblas -larmadillo -fopenmp
# Last 100 lines of the build log.
