MANIFEST.in
README.md
setup.cfg
setup.py
falcon_kit/FastaReader.py
falcon_kit/__init__.py
falcon_kit/align_dw.py
falcon_kit/align_edlib.py
falcon_kit/bash.py
falcon_kit/falcon_kit.py
falcon_kit/fc_asm_graph.py
falcon_kit/functional.py
falcon_kit/gfa_graph.py
falcon_kit/io.py
falcon_kit/multiproc.py
falcon_kit/pype.py
falcon_kit/pype_tasks.py
falcon_kit/run_support.py
falcon_kit/snakemake.py
falcon_kit/stats_preassembly.py
falcon_kit/tiling_path.py
falcon_kit.egg-info/PKG-INFO
falcon_kit.egg-info/SOURCES.txt
falcon_kit.egg-info/dependency_links.txt
falcon_kit.egg-info/entry_points.txt
falcon_kit.egg-info/not-zip-safe
falcon_kit.egg-info/requires.txt
falcon_kit.egg-info/top_level.txt
falcon_kit/mains/LAmerge.py
falcon_kit/mains/LAsort.py
falcon_kit/mains/__init__.py
falcon_kit/mains/actg_coordinate.py
falcon_kit/mains/bam2dexta.py
falcon_kit/mains/calc_cutoff.py
falcon_kit/mains/collect_contig_gfa.py
falcon_kit/mains/collect_pread_gfa.py
falcon_kit/mains/consensus.py
falcon_kit/mains/consensus_gather_fasta_fofn.py
falcon_kit/mains/consensus_split.py
falcon_kit/mains/consensus_task.py
falcon_kit/mains/contig_annotate.py
falcon_kit/mains/copy_fofn.py
falcon_kit/mains/copy_mapped.py
falcon_kit/mains/cromwell_run_uows_tar.py
falcon_kit/mains/cromwell_symlink.py
falcon_kit/mains/cromwell_undot.py
falcon_kit/mains/cromwell_write_json.py
falcon_kit/mains/ctg_link_analysis.py
falcon_kit/mains/dazzler.py
falcon_kit/mains/db.py
falcon_kit/mains/dedup_a_tigs.py
falcon_kit/mains/dedup_a_tp.py
falcon_kit/mains/fasta2fasta.py
falcon_kit/mains/fasta_filter.py
falcon_kit/mains/fasta_subsample.py
falcon_kit/mains/fetch_reads.py
falcon_kit/mains/gen_bandage_csv.py
falcon_kit/mains/gen_gfa_v1.py
falcon_kit/mains/gen_gfa_v2.py
falcon_kit/mains/generate_read_to_ctg_map.py
falcon_kit/mains/generic_gather.py
falcon_kit/mains/generic_run_units_of_work.py
falcon_kit/mains/generic_scatter_one_uow.py
falcon_kit/mains/generic_scatter_uows.py
falcon_kit/mains/generic_scatter_uows_tar.py
falcon_kit/mains/generic_tar_uows.py
falcon_kit/mains/generic_unsplit.py
falcon_kit/mains/get_read_ctg_map.py
falcon_kit/mains/graph_to_contig.py
falcon_kit/mains/graph_to_utgs.py
falcon_kit/mains/hgap4_adapt.py
falcon_kit/mains/las_write_empty.py
falcon_kit/mains/noop.py
falcon_kit/mains/ovlp_filter.py
falcon_kit/mains/ovlp_stats.py
falcon_kit/mains/ovlp_to_graph.py
falcon_kit/mains/pr_ctg_track.py
falcon_kit/mains/reduce_preads.py
falcon_kit/mains/report_pre_assembly.py
falcon_kit/mains/rr_ctg_track.py
falcon_kit/mains/run1.py
falcon_kit/mains/run_python_modules.py
falcon_kit/mains/symlink_mapped.py
falcon_kit/mains/task_report_pre_assembly.py
falcon_kit/mains/tasks.py
falcon_kit/mains/zmw_collect.py
falcon_kit/mains/zmw_subsample.py
falcon_kit/testkit/__init__.py
falcon_kit/testkit/test_assembly.py
falcon_kit/testkit/test_foo.py
falcon_kit/util/__init__.py
falcon_kit/util/alarm.py
falcon_kit/util/io.py
falcon_kit/util/ordered_set.py
falcon_kit/util/system.py
src/c/DW_banded.c
src/c/Makefile
src/c/Makefile.osx
src/c/common.h
src/c/ext_falcon.c
src/c/falcon.c
src/c/kmer_lookup.c
test/test_actg_coordinate.py
test/test_align_dw.py
test/test_align_edlib.py
test/test_calc_cutoff.py
test/test_collect_contig_gfa.py
test/test_collect_pread_gfa.py
test/test_consensus.py
test/test_contig_annotate.py
test/test_ctg_link_analysis.py
test/test_dedup_a_tigs.py
test/test_dedup_a_tp.py
test/test_fasta_filter.py
test/test_fasta_subsample.py
test/test_fastareader.py
test/test_functional.py
test/test_gen_bandage_csv.py
test/test_gen_gfa_v1.py
test/test_gen_gfa_v2.py
test/test_gfa_graph.py
test/test_graph_to_contig.py
test/test_graph_to_utgs.py
test/test_io.py
test/test_ovlp_filter.py
test/test_ovlp_stats.py
test/test_ovlp_to_graph.py
test/test_run.py
test/test_run_LG.py
test/test_run_python_modules.py
test/test_run_support.py
test/test_stats_preassembly.py
test/test_tiling_path.py
test/test_util_io.py
test/test_util_system.py
test/test_zmw_collect.py
test/test_zmw_subsample.py