bin/BamCleanHaloplex
bin/BamClipOverlap
bin/BamDownsample
bin/BamExtract
bin/BamFilter
bin/BamRemoveVariants
bin/BamToFastq
bin/BedAdd
bin/BedAnnotateFreq
bin/BedAnnotateFromBed
bin/BedAnnotateGC
bin/BedAnnotateGenes
bin/BedChunk
bin/BedCoverage
bin/BedExtend
bin/BedGeneOverlap
bin/BedHighCoverage
bin/BedInfo
bin/BedIntersect
bin/BedLiftOver
bin/BedLowCoverage
bin/BedMerge
bin/BedReadCount
bin/BedShrink
bin/BedSort
bin/BedSubtract
bin/BedToFasta
bin/BedpeAnnotateBreakpointDensity
bin/BedpeAnnotateCnvOverlap
bin/BedpeAnnotateCounts
bin/BedpeAnnotateFromBed
bin/BedpeExtractGenotype
bin/BedpeExtractInfoField
bin/BedpeFilter
bin/BedpeGeneAnnotation
bin/BedpeSort
bin/BedpeToBed
bin/CfDnaQC
bin/CnvFilterAnnotations
bin/CnvGeneAnnotation
bin/CnvReferenceCohort
bin/ExportcBioportal
bin/ExtractMethylationData
bin/FastaFromBam
bin/FastaInfo
bin/FastaMask
bin/FastqAddBarcode
bin/FastqCheckUMI
bin/FastqConcat
bin/FastqConvert
bin/FastqDownsample
bin/FastqExtract
bin/FastqExtractBarcode
bin/FastqExtractUMI
bin/FastqFormat
bin/FastqList
bin/FastqMidParser
bin/FastqToFasta
bin/FastqTrim
bin/GSvar.ini.example
bin/GSvarServer.ini.example
bin/GSvar_filters.ini
bin/GSvar_filters_cnv.ini
bin/GSvar_filters_sv.ini
bin/GSvar_special_regions.tsv
bin/GenePrioritization
bin/GenesToApproved
bin/GenesToBed
bin/GenesToTranscripts
bin/GraphStringDb
bin/HgvsToVcf
bin/MantaFindDuplicates
bin/MantaVcfFix
bin/MappingQC
bin/NGSDAddVariantsGermline
bin/NGSDAddVariantsSomatic
bin/NGSDAnnotateCNV
bin/NGSDAnnotateGeneExpression
bin/NGSDAnnotateRNA
bin/NGSDAnnotateSV
bin/NGSDExportAnnotationData
bin/NGSDExportCnvTrack
bin/NGSDExportGenes
bin/NGSDExportGff
bin/NGSDExportIgvGeneTrack
bin/NGSDExportSV
bin/NGSDExportSamples
bin/NGSDExportStudyGHGA
bin/NGSDExtractRNACohort
bin/NGSDImportClinvarAccessions
bin/NGSDImportEnsembl
bin/NGSDImportExpressionData
bin/NGSDImportGeneInfo
bin/NGSDImportGenlab
bin/NGSDImportHGNC
bin/NGSDImportHPO
bin/NGSDImportOMIM
bin/NGSDImportORPHA
bin/NGSDImportOncotree
bin/NGSDImportQC
bin/NGSDImportSampleQC
bin/NGSDInit
bin/NGSDSameSample
bin/NGSDUpdateSvGenotype
bin/PhenotypeSubtree
bin/PhenotypesToGenes
bin/QcToTsv
bin/ReadQC
bin/RnaQC
bin/RohHunter
bin/SampleAncestry
bin/SampleGender
bin/SamplePath
bin/SampleSimilarity
bin/SeqPurge
bin/SnifflesVcfFix
bin/SomaticQC
bin/SplicingToBed
bin/SvFilterAnnotations
bin/TranscriptComparison
bin/TranscriptsToBed
bin/TrioMaternalContamination
bin/TrioMendelianErrors
bin/TsvDiff
bin/TsvFilter
bin/TsvInfo
bin/TsvMerge
bin/TsvSlice
bin/TsvToQC
bin/UpdHunter
bin/VariantAnnotateASE
bin/VariantAnnotateFrequency
bin/VariantFilterAnnotations
bin/VariantFilterRegions
bin/VariantQC
bin/VariantRanking
bin/VcfAdd
bin/VcfAnnotateConsequence
bin/VcfAnnotateFromBed
bin/VcfAnnotateFromBigWig
bin/VcfAnnotateFromVcf
bin/VcfAnnotateHexplorer
bin/VcfAnnotateMaxEntScan
bin/VcfBreakMulti
bin/VcfCalculatePRS
bin/VcfCheck
bin/VcfExtractSamples
bin/VcfFilter
bin/VcfLeftNormalize
bin/VcfSort
bin/VcfSplit
bin/VcfStreamSort
bin/VcfStrip
bin/VcfSubtract
bin/VcfToBed
bin/VcfToBedpe
bin/VcfToTsv
bin/settings.ini.example
bin/settings_nightly.ini
lib/libcppCORE.so
lib/libcppCORE.so.1
lib/libcppCORE.so.1.0
lib/libcppCORE.so.1.0.0
lib/libcppNGS.so
lib/libcppNGS.so.1
lib/libcppNGS.so.1.0
lib/libcppNGS.so.1.0.0
lib/libcppNGSD.so
lib/libcppNGSD.so.1
lib/libcppNGSD.so.1.0
lib/libcppNGSD.so.1.0.0
lib/libcppXML.so
lib/libcppXML.so.1
lib/libcppXML.so.1.0
lib/libcppXML.so.1.0.0
