# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jun 10 00:58:15 2025
# ------------------------------------------------

package:
  name: mykrobe
  version: 0.13.0
source:
  sha256: 49662937378a4ff10ffcb3876efcc069be58f0dc183615e9cffb57f51348a45e
  url: https://github.com/Mykrobe-tools/mykrobe/archive/v0.13.0.tar.gz
build:
  entry_points:
    - mykrobe = mykrobe.cli:main
  number: '5'
  run_exports:
    - mykrobe >=0.13.0,<0.14.0a0
  string: py39h8af72ac_5
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-aarch64 2.43 h4c662bb_4
    - binutils_linux-aarch64 2.43 hf1166c9_4
    - gcc_impl_linux-aarch64 13.3.0 h80a1502_2
    - gcc_linux-aarch64 13.3.0 h1cd514b_11
    - gxx_impl_linux-aarch64 13.3.0 h7eae8fb_2
    - gxx_linux-aarch64 13.3.0 h2864abd_11
    - kernel-headers_linux-aarch64 4.18.0 h05a177a_18
    - ld_impl_linux-aarch64 2.43 h80caac9_4
    - libgcc 15.1.0 he277a41_2
    - libgcc-devel_linux-aarch64 13.3.0 h0c07274_102
    - libgomp 15.1.0 he277a41_2
    - libsanitizer 13.3.0 ha58e236_2
    - libstdcxx 15.1.0 h3f4de04_2
    - libstdcxx-devel_linux-aarch64 13.3.0 h0c07274_102
    - make 4.4.1 h2a6d0cb_2
    - sysroot_linux-aarch64 2.17 h68829e0_18
    - tzdata 2025b h78e105d_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - anytree 2.13.0 pyhd8ed1ab_0
    - biopython 1.85 py39h060674a_1
    - blinker 1.9.0 pyhff2d567_0
    - brotli-python 1.1.0 py39h7dbf29c_3
    - bzip2 1.0.8 h68df207_7
    - c-ares 1.34.5 h86ecc28_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - certifi 2025.4.26 pyhd8ed1ab_0
    - cffi 1.17.1 py39hecfc5ed_0
    - charset-normalizer 3.4.2 pyhd8ed1ab_0
    - cython 3.1.2 py39h41befb8_1
    - dnspython 2.7.0 pyhff2d567_1
    - gzip 1.14 h86ecc28_0
    - h2 4.2.0 pyhd8ed1ab_0
    - hpack 4.1.0 pyhd8ed1ab_0
    - hyperframe 6.1.0 pyhd8ed1ab_0
    - icu 75.1 hf9b3779_0
    - idna 3.10 pyhd8ed1ab_1
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.3 h50a48e9_0
    - ld_impl_linux-aarch64 2.43 h80caac9_4
    - libabseil 20240722.0 cxx17_h18dbdb1_4
    - libasprintf 0.24.1 h5e0f5ae_0
    - libblas 3.9.0 31_h1a9f1db_openblas
    - libboost 1.86.0 h4d13611_3
    - libcblas 3.9.0 31_hab92f65_openblas
    - libcurl 8.14.1 h6702fde_0
    - libedit 3.1.20250104 pl5321h976ea20_0
    - libev 4.33 h31becfc_2
    - libexpat 2.7.0 h5ad3122_0
    - libffi 3.4.6 he21f813_1
    - libgcc 15.1.0 he277a41_2
    - libgcc-ng 15.1.0 he9431aa_2
    - libgettextpo 0.24.1 h5ad3122_0
    - libgfortran 15.1.0 he9431aa_2
    - libgfortran5 15.1.0 hbc25352_2
    - libgomp 15.1.0 he277a41_2
    - libiconv 1.18 hc99b53d_1
    - libidn2 2.3.8 h53e0a65_0
    - liblapack 3.9.0 31_h411afd4_openblas
    - liblzma 5.8.1 h86ecc28_2
    - libnghttp2 1.64.0 hc8609a4_0
    - libnsl 2.0.1 h31becfc_0
    - libopenblas 0.3.29 pthreads_h9d3fd7e_0
    - libsqlite 3.50.1 h5eb1b54_0
    - libssh2 1.11.1 h18c354c_0
    - libstdcxx 15.1.0 h3f4de04_2
    - libstdcxx-ng 15.1.0 hf1166c9_2
    - libunistring 0.9.10 hf897c2e_0
    - libuuid 2.38.1 hb4cce97_0
    - libxcrypt 4.4.36 h31becfc_1
    - libzlib 1.3.1 h86ecc28_2
    - mongodb 6.0.16 h1be33e2_1
    - mongoengine 0.29.1 pyhd8ed1ab_2
    - ncurses 6.5 ha32ae93_3
    - numpy 1.22.4 py39h451b137_0
    - openssl 3.5.0 hd08dc88_1
    - pcre 8.45 h01db608_0
    - pip 25.1.1 pyh8b19718_0
    - pycparser 2.22 pyh29332c3_1
    - pymongo 4.13.0 py39hb25661d_0
    - pysocks 1.7.1 pyha55dd90_7
    - python 3.9.23 h0819846_0_cpython
    - python_abi 3.9 7_cp39
    - pyvcf3 1.0.4 py39hd1b7a2b_0
    - readline 8.2 h8382b9d_2
    - requests 2.32.4 pyhd8ed1ab_0
    - setuptools 80.9.0 pyhff2d567_0
    - six 1.17.0 pyhd8ed1ab_0
    - snappy 1.2.1 hd4fb6f5_1
    - sniffio 1.3.1 pyhd8ed1ab_1
    - tar 1.34 h048efde_0
    - tk 8.6.13 noxft_h5688188_102
    - tzdata 2025b h78e105d_0
    - urllib3 2.4.0 pyhd8ed1ab_0
    - wget 1.21.4 h3861a24_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - yaml-cpp 0.8.0 h5ad3122_0
    - zlib 1.3.1 h86ecc28_2
    - zstandard 0.23.0 py39h060674a_2
    - zstd 1.5.7 hbcf94c1_2
  run:
    - anytree
    - biopython
    - libgcc >=13
    - libstdcxx >=13
    - libzlib >=1.3.1,<2.0a0
    - mongodb
    - mongoengine >=0.24.1
    - numpy >=1.22.4,<2.0a0
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - pyvcf3 >=1.0.3
    - pyvcf3 >=1.0.4,<2.0a0
    - requests
    - setuptools
test:
  commands:
    - mykrobe --version
    - mykrobe --help
    - mykrobe predict --help
    - mykrobe variants --help
    - mykrobe panels describe
    - test -x $PREFIX/lib/python*/site-packages/mykrobe/cortex/mccortex31
    - $PREFIX/lib/python*/site-packages/mykrobe/cortex/mccortex31 uniqkmers -k 7 1
  imports:
    - mykrobe
about:
  description: Rapid antibiotic-resistance predictions from genome sequence data for
    Staphylococcus aureus and Mycobacterium tuberculosis.
  dev_url: https://github.com/Mykrobe-tools/mykrobe
  doc_url: https://github.com/Mykrobe-tools/mykrobe/wiki
  home: https://github.com/Mykrobe-tools/mykrobe
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Antibiotic resistance prediction in minutes.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:Mykrobe
    - doi:10.12688/wellcomeopenres.15603.1
  recipe-maintainers:
    - martinghunt
    - mbhall88
  skip-lints:
    - uses_setuptools
