# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Nov 18 11:04:02 2024
# ------------------------------------------------

package:
  name: muse
  version: 2.1.2
source:
  - patches:
      - 0001-Makefile.patch
      - fix-install_muse.sh.patch
      - version.patch
    sha256: 48df7ec3f64244400243163b48eb658105854b7b0d6287af98242dd89f396f59
    url: https://github.com/wwylab/MuSE/archive/refs/tags/v2.1.2.tar.gz
  - folder: boost-1.87.0.beta1
    sha256: f12e906fde4c9d04d88c3aa821f00501817a37503441cbca8ce7852a2194aeb0
    url: https://github.com/boostorg/boost/releases/download/boost-1.87.0.beta1/boost-1.87.0.beta1-b2-nodocs.tar.gz
build:
  number: '2'
  run_exports:
    - muse >=2.1.2,<3.0a0
  string: h10a2d34_2
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - autoconf 2.71 pl5321h2148fe1_1
    - automake 1.17 pl5321h8af1aa0_0
    - binutils_impl_linux-aarch64 2.43 h4c662bb_2
    - binutils_linux-aarch64 2.43 hf1166c9_2
    - gcc_impl_linux-aarch64 12.4.0 hfb8d6db_1
    - gcc_linux-aarch64 12.4.0 heb3b579_6
    - gxx_impl_linux-aarch64 12.4.0 h3c1ec91_1
    - gxx_linux-aarch64 12.4.0 h3f57e68_6
    - kernel-headers_linux-aarch64 4.18.0 h05a177a_18
    - ld_impl_linux-aarch64 2.43 h80caac9_2
    - libgcc 14.2.0 he277a41_1
    - libgcc-devel_linux-aarch64 12.4.0 h7b3af7c_101
    - libgcc-ng 14.2.0 he9431aa_1
    - libgomp 14.2.0 he277a41_1
    - libsanitizer 12.4.0 h469570c_1
    - libstdcxx 14.2.0 h3f4de04_1
    - libstdcxx-devel_linux-aarch64 12.4.0 h7b3af7c_101
    - libtool 2.4.7 h0a1ffab_1
    - libxcrypt 4.4.36 h31becfc_1
    - m4 1.4.18 h516909a_1001
    - make 4.4.1 h2a6d0cb_2
    - perl 5.32.1 7_h31becfc_perl5
    - sysroot_linux-aarch64 2.17 h5b4a56d_18
    - tzdata 2024b hc8b5060_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h68df207_7
    - c-ares 1.32.3 h68df207_0
    - ca-certificates 2024.8.30 hcefe29a_0
    - icu 73.2 h787c7f5_0
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.3 h50a48e9_0
    - libcurl 8.8.0 h4e8248e_1
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h31becfc_2
    - libgcc 14.2.0 he277a41_1
    - libgcc-ng 14.2.0 he9431aa_1
    - libgomp 14.2.0 he277a41_1
    - libnghttp2 1.58.0 hb0e430d_1
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx 14.2.0 h3f4de04_1
    - libstdcxx-ng 14.2.0 hf1166c9_1
    - libzlib 1.2.13 h68df207_6
    - ncurses 6.5 hcccb83c_1
    - openssl 3.4.0 h86ecc28_0
    - xz 5.2.6 h9cdd2b7_0
    - zlib 1.2.13 h68df207_6
    - zstd 1.5.6 h02f22dd_0
  run:
    - _openmp_mutex >=4.5
    - bzip2 >=1.0.8,<2.0a0
    - icu >=73.2,<74.0a0
    - libcurl >=8.8.0,<9.0a0
    - libgcc >=12
    - libgomp
    - libstdcxx >=12
    - libzlib >=1.2.13,<2.0a0
    - xz >=5.2.6,<6.0a0
test:
  commands:
    - MuSE 2>&1 | grep "Version"
about:
  dev_url: https://github.com/wwylab/MuSE
  doc_url: https://github.com/wwylab/MuSE/blob/v2.1.2/README.md
  home: https://bioinformatics.mdanderson.org/public-software/muse
  license: GPL-2.0-or-later
  license_family: GPL
  license_file: LICENSE
  summary: An accurate and ultra-fast somatic point mutation calling tool for whole-genome
    sequencing (WGS) and whole-exome sequencing (WES) data from heterogeneous tumor
    samples.
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1101/gr.278456.123
    - doi:10.1186/s13059-016-1029-6
