fimo
fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_11 --bgfile xstreme_example_output_files/background --motif TGCACTCCAGCCTGG xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
xstreme_example_output_files/meme_out/meme.xml
nrmix.nseqs.100.100bp.seed.1.fa
0.0001
TGCTCTACCGGCTGA
0.373
GGCGCTTCCGCCTCG
0.425
TGCACACGTGCTTGG
0.184
TGCTCACCCGCCTGG
0.00297
TGCACTCGAGGCTGG
0.0009
TGTACACGTGGCTGG
0.305
AGCGCTGCAGTCTGG
0.207
TGCTCTCCAGGATGA
0.194
TGCATTCCAGCCTTG
0.0402
TGCACTCCAGCCTGG
5.9e-05
TGCACTCCAGCCTGG
5.9e-05
TGCACTCTGGCCTGA
0.269
TGCACGCCAGACTGG
0.0392
TACACTCTAGCCTAG
0.269
GGCACTCCAGCCTGG
0.000391
CTCACTCAAGCCTGG
0.269
TGCACTCTATCCTGG
0.0392
TGCACTCCAGTCTGG
0.000135
TGCACTCCAGCCTGG
5.9e-05
GGCTCCCGCGGCTGG
0.305
TGCACTCCAGCCTGG
5.9e-05
GGCACCCCCTGCTGG
0.425
TGCGCTCCAGCCTGG
0.000312
GGCGCTTCAGCCTGC
0.261
TTCACACCAGCCTGG
0.00445
TGGACTTCAGCGTGG
0.269
TTCTCACCAGGCTTG
0.294
TGCATTCCAGCCTGG
0.00222
TTCATTCCAGCCTGG
0.0402
TGCACTCCAGCCTGG
5.9e-05
GGCTCTTCCGGCTGG
0.168
TGTTGTCCAGCCTAG
0.437
CACACTCCAGTTTGG
0.436
AGCACACCAGCCCAG
0.426
AGCGCTCCAGGCTGT
0.242
TGCAATCTAGCCTTG
0.269
TGCACTCCAGCCTGG
5.9e-05
TGCACACCAGCCTGG
0.000106
TGTTGTCCAGGCTGG
0.194
TGGTGTGCAGCCTGG
0.437
TGCACTCCAGCCTGG
5.9e-05
TTCACTCCTGCCTGG
0.0413
CCCACTCCAGTCTGG
0.0865
TGTTCTCCATTCTGG
0.194
TGCCCTGCAGCATGG
0.269
TGCGCTCCCGGCCCG
0.425
TGCACTCCAGCCTGG
5.9e-05
TGCACCACAGCCTGA
0.269
TGCACTCCAGCCTGG
5.9e-05
GGTTCAGCAGCCTGG
0.314
TGCTCTCGCGCCCGG
0.0791
TGCGCACGAGTCTAG
0.144
CGCGCTCCCGGCTCG
0.425
TACACTCCCGTTTGG
0.2
GGCGCGCCAGGCGGG
0.425
GGCAGTCCAGCCCGG
0.144
TGCGAACCTGCCTGG
0.193
GGGTCTCCAGGCAGG
0.413
TGCAGACCAGCAGGG
0.425
GACTCACGCGGCTGG
0.453
CGCGCTCGCGCCTGG
0.082
GGCGCTCGAGGCTGG
0.0158
AGAACTCCAGCCTGA
0.273
TGCGCTTGCGCCAGG
0.425
TTAAGACCAGCCTGG
0.413
TGCTCTCCACGGTGG
0.194
TGCAATCTAGCCTTG
0.269
TGCTAGCCAGCCTTG
0.453
GGCGCTTGAGTCTGG
0.159
TGCACTCCTGCCTGC
0.0413
TGGACTCCAAGCTGT
0.437
TGCTCTCAACCCTGG
0.0865
AGGACTCAAGTCTGG
0.436
GGCGGCCCAGCCTGG
0.269
GGCGCACCATCCGGG
0.348
TGCTCAACAGGCTGC
0.294
TGGTCTGAAGCCTGG
0.436
TGCACCCCCTGCTGG
0.242
yes