fimo
fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_2 --bgfile xstreme_example_output_files/background --motif CCASYAGRKGGCRSY xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa
xstreme_example_output_files/meme_out/meme.xml
nrmix.nseqs.100.100bp.seed.1.fa
0.0001
CCTGCAGGGGGCAGA
0.016
CCAGTAGAGGGCGCT
0.00217
CCACCAGGGGGCACC
0.00217
CCACCAGGGGGCGCT
0.000757
CCACTAGGGGGCGCC
0.000785
ACACTAGGGGGCTCA
0.046
CCACCAGGTGGCAGT
0.00388
CCACCTGGTGGTGAA
0.0867
CCACAAGAGGGCACC
0.00547
CCAGTAGAGGGTACT
0.00861
CTAGCAGGGGGCAGT
0.0751
CCACAAGGAGGCACA
0.0243
ACAGCAGAGGGCCAC
0.118
CCGCCAGAGGTCGCA
0.0543
ACAGAAGGTGGTGAT
0.118
CCGGCAGGTGGATCC
0.0647
CCACTTGGGGGCGCT
0.00569
CCTCTAGGTGGCAGT
0.00834
CCACCGGGGGGCGTG
0.0526
ACACCAGGGGGCGCA
0.013
TCAGAAGGTGGCAGT
0.0374
CCACCAGAGGGCAGT
0.00388
CCACGTGGTGGCCCC
0.0705
CCTCCGGGGGGCGCG
0.0442
CCAGGAGATGGCGCC
0.00849
CCTCTAGGTGGAGCT
0.00925
CCAGGAGGTGGCGCT
0.00603
CCGCTAGGGGGCGAG
0.0228
TCACAAGAGGGCGGT
0.0238
CCACTAGATGGCAGC
0.00563
CCACAAGGGGGCGAT
0.00662
CCACTAGGTGGCGGG
0.00662
CCTGTAGGTGGTGGC
0.0315
CCAGCAGGGGGCACC
0.00377
CCGGGAGAGGGCGTC
0.0501
CCAGGAGAGGGAGAC
0.0315
CCACTAGGGGTTACA
0.0534
ACCCTAGAGGGCGCC
0.118
CCAGGAGGGGGTACA
0.0284
TCAGAAGGTGGAGGA
0.0957
TCAGTAGAGGGCGCT
0.0123
CCGCAAGAGGGCGCC
0.0103
CCACTAGATGTCCCT
0.0579
CCACAGGGTGGCAGT
0.0276
CCACTAGAGGGACAA
0.0657
CCCCCAGAGGGCGCA
0.0543
CCGCTAGGTGTCACT
0.0353
CCAGTTGGGGGCGCC
0.00808
CCACTGGGTGGAGCT
0.0195
CCTCCAGGTGGAGCC
0.0123
CCACTAGATGGCAGA
0.00762
CCAGGGGAGGGCGAA
0.0971
CCACCAGGTGGAGAG
0.0246
ACACCAGGGGGAGCG
0.0335
CCGCCAGAGGGAGAC
0.0315
ACTCTAGATGGCAGC
0.0512
CCACCAGAGGGCGCA
0.00388
CCACTAGGTGGAAGG
0.0154
CCACTAGATGTCACG
0.0392
TCGCTAGGTGGCGCA
0.045
ACTCTAGGGGGCGAC
0.0455
CCAGTAGGGGGCAGT
0.00377
CCAGAAGAGGGAAAG
0.0564
CCTGTAGGGGGCATG
0.0392
CCACTAGGGGGTGGT
0.00662
ACACCAGGTGGCAGC
0.0202
CCACCTGGTGTCAGC
0.076
CCAGCAGGGGGACCC
0.022
CCACCAGGGGGAACA
0.00687
ACAGGAGGTGGCAGC
0.0496
CCACTTGGTGGTGCT
0.0217
CCTCTAGGGGGAGCA
0.0129
CCAGGAGAGGGCGCT
0.00603
CCACAAGTGGGAGCT
0.057
CCGCCAGAGGGCGCA
0.00947
CCAGGAGAGGGAGTT
0.0329
CCAGCTGAGGGCGGC
0.0154
CCACCAGGTGGAGAC
0.0123
CCACCTGGTGGTTGT
0.104
CCACTAGATGGCCCT
0.0104
CCAGCAGAGGGCCAG
0.0626
CCAGAAGAGGGCAGC
0.00849
CCACTGGGGGGCAGA
0.022
CCTCCGGGGGGAGCT
0.0374
CCACTAGGGGGAGGC
0.00563
TCACCAGGGGGAGCC
0.0202
CCAGTTGGGGGCGCT
0.00681
CCACTAGAGGGTACT
0.00681
CCTCTAGTGGGCATT
0.118
CCAGCAGGAGGCAGT
0.0157
CCAGCAGGGGGTGCC
0.00779
CCAGAGGAGGGCGCC
0.0243
CCTGGTGGTGGCACT
0.0557
CCTGTAGGGGGCGAG
0.0273
TCCCTAGAGGGCGCC
0.126
CCACAAGGGGTAATT
0.0942
CCCCTAGATGGCAGC
0.0697
CCACTAGGTGGCAAT
0.00603
CCACTGGGAGGCATC
0.104
CCACAGGGGGGCGCT
0.0127
CCTCTAGAGGGCAGC
0.00867
CCGCCAGGGGGCGCC
0.00569
CCGCCAGGAGGCGCG
0.0432
CCACCGGGTGGCGGG
0.0329
CCACGTGGGGGCCCC
0.0558
CCAGAGGAGGGAGGA
0.09
CCTCCGGGAGGCGCC
0.085
CCGGCAGAGGGAGTG
0.0884
ACACTAGAGGGCGCA
0.0154
CCAGAAGGGGGTGCT
0.0103
CCAGGAGTGGGCGGG
0.126
CCGCGGGGTGGCGCC
0.0615
TCACTAGGGGGAGAC
0.0418
CCGCTAGATGGCAGC
0.0129
CCACCAGATGGATCC
0.0255
CCCGGAGAGGGCGCA
0.119
TCACGTGGGGGCGCG
0.11
CCTGGAGGTGGAATC
0.099
CCACGAGGGGGCGCG
0.00825
CCACAAGGGGGTGGC
0.013
CCACGGGAGGGAGGG
0.108
CCGCCAGGGGGCAGC
0.00849
CCAGCAGATGGCGCC
0.00477
CCGGAAGGGGGCGCG
0.022
CCGCTTGGGGGCGCC
0.016
CCAGGAGGTGGTGGC
0.0285
CCGCCAGGAGGTGGT
0.0729
CCGGCAGGGGGCGGT
0.00834
CCGCGAGGGGGCCGG
0.105
CCGCTGGGGGGCGAG
0.0922
CCAGTAGGGGGTGGA
0.0153
CCACATGGAGGAACT
0.0833
CCCGCAGGAGGCGCT
0.113
CCTCCAGGGGTCGGC
0.0374
TCACTAGAGGGCCTC
0.113
CCACAAGGGGAAGAC
0.0887
TCACTAGGAGGCATT
0.0963
CCTGGAGAAGGCACA
0.103
CCTGTAGGGGGAAAG
0.061
CCACAAGGAGACGCC
0.0798
CCGCCAGGAGGCAGC
0.0363
TCTCAAGATGGCGGC
0.079
CCGGAGGGGGGCACG
0.101
CCGCGAGGAGGCGGA
0.0857
CCACAAGGTGGCAGC
0.00681
TCACCAGGGGGCGCT
0.00845
CCGCCTGGTGGCACC
0.0273
ACAGCAGATGGAGCT
0.0315
CCAGTAGGGGGAGAC
0.0109
CCAGCAGATGGTCAT
0.0963
CCTGAAGGTGGAGTT
0.0622
CCAGTAGGGGGAGAG
0.0225
CCACGTGGGGGCAGG
0.045
CCAGCTGATGTCAGC
0.112
CCACGTGGGGGCTCA
0.0753
CCGGAAGGGGTCAGC
0.0902
ACGCTAGGGGGCGTT
0.0512
CCACAAGGGGGCAGC
0.00569
CCACTAGTGGGCAGG
0.0628
CCACTAGTGGGCGAA
0.0695
CCTGCAGGGGTCGTT
0.0815
TCACGAGAGGACGCC
0.126
CCAGAAGAGGGCGCT
0.00494
CCGGGTGAGGGCGCT
0.0496
CCTCTAGGTGGCTCC
0.0226
CCTGCAGATGGTTCT
0.0915
CCTGCAGGAGACGCT
0.118
CCAGCAGGGGACGCG
0.0329
TCACTGGGTGGTACT
0.126
CCACTTGAAGGAAAT
0.124
CCCCCAGGGGGCGGG
0.0753
CCGGGAGGGGGAGGG
0.0705
CCAGCGGGGGGTGGG
0.0888
CCAGTTGGGGACGGA
0.0957
ACAGGAGGAGGCGGT
0.0992
CCAGCAGAGGGCAAC
0.00884
CCGGGAGGGGGCGCG
0.0273
CCGGCAGGGGGAAGT
0.0202
CCACCAGGGGGCGCT
0.000757
CCAGCAGAGGGCGCG
0.00662
CCTGCAGATGGCAGA
0.0262
CCACTAGGTGACTGG
0.129
CCTGCTGAGGGCAGT
0.0378
CCACTAGGGGGCTAC
0.0174
CCAGCAGATGGCAGT
0.00633
CCACTAGATGGCCAT
0.0262
CCGCCTGGTGGCATG
0.126
CCACCAGAGGGCGCC
0.00217
CCACCAGGTGGCCCA
0.0169
CCAGGAGGGGGTATT
0.0469
CCACCTGGTGGTGAA
0.0867
CCACTGGGTGGCAGC
0.0194
CCACAGGAGGGCGGC
0.0262
CCACTGGAGGGCGTC
0.0315
CCACTAGAGGGATTT
0.0444
CCTGTAGAGGGCAGC
0.0118
CCACAAGGAGGCAGC
0.0226
CCGCCAGGTGGCAAC
0.0208
CCGGGAGGGGGCGCG
0.0273
CCGCCAGGGGGCGCT
0.00494
CCTGGAGATGGCGCA
0.0315
CCACCAGAGGGCAGC
0.00477
CCGCTAGGGGGCGCG
0.00884
CCGGCAGGTGGCGCC
0.00849
CCGGTAGAGGGCAGC
0.0129
CCACCAGGGGGCGCC
0.00112
CCAGAAGATGGCCAG
0.113
CCTGGAGGGGGAGCT
0.022
CCGGAAGGGGGCTGC
0.0569
CCAGCGGGGGGCATC
0.0425
CCCGCAGGGGGAGCC
0.0705
CCTCAAGGGGGCGCT
0.00662
CCACTAGGGGGCGTT
0.00502
ACTCCAGGTGGCGCT
0.0238
CCTGTAGGAGGAAGG
0.123
CCAGCGGGTGGCGAG
0.0705
CCTGGAGGGGGCTCA
0.0705
CCAGCAGAGGGCCCA
0.022
CCGCCAGGGGGCCCA
0.0329
CCGCCTGGGGGTGGA
0.0963
CCGGCAGGGGGCAGT
0.00926
CCACAGGGGGGCAGT
0.022
CCTCCAGAGGGCAGC
0.00966
CCAGTAGGAGGCGCT
0.00849
CCTGTAGGGGACGCT
0.0315
CCACCAGAGGGAGCA
0.00762
CCGCCAGGAGGCGCC
0.0223
ACAGAAGAGGACACT
0.122
CCGCCAGGGGGAGCT
0.00849
TCACTAGATGGCGCT
0.0123
CCACCAGAGGGCGCT
0.00154
CCACAAGGGGGAGGA
0.013
ACACTAGAGGGAAGC
0.0328
CCACCAGAGGGCAGT
0.00388
CCAGTAGAGGGAGCA
0.00849
CCGCGTGGTGGCGCC
0.046
ACAGTAGGTGGCGCT
0.0115
CCACTAGATGGCACT
0.00377
CCTGTAGAGGGTGCC
0.022
CCTGCAGGGGGCAGT
0.00854
CCACATGGTGGCAGG
0.0459
CCAGCAGGGGGAGAT
0.0103
CCACTAGATGGCTCC
0.0116
ACTCTAGGGGGCAGT
0.0273
CCAGCAGAGGGCACT
0.00377
CCAGGTGAGGGCGAC
0.0526
CCACAAGAGGGCCAT
0.035
CCGGCAGGGGGCGCT
0.00603
CCAGGAGGTGGCGCC
0.00681
CCAGTAGGGGGTGGA
0.0153
CCGCCTGGTGGCGCT
0.0208
CCGGTAGAGGGTGCT
0.0208
CCGCTAGGTGGTGGG
0.05
CCACCAGATGGCGCG
0.00662
CCAGCAGGTGGCACT
0.00377
CCTGAAGATGGCAGT
0.0238
CCACTAGAGGGCCTC
0.0284
CCACCAGGGGGAGGC
0.00587
CCCCCAGAGGGCACC
0.0443
CCTCCTGGAGGAGGT
0.126
CCAGCAGGTGGCAGC
0.00603
CCAGCAGAGGGCGCC
0.00377
CCACAAGGGGTCGCT
0.0154
CCAGCAGGGGGAAGC
0.00849
CCACCAGAGGGCGGG
0.00681
CCAGCAGGTGGCGTC
0.00947
CCTCCAGATGGAGCT
0.013
CCACTAGATGGAGAA
0.022
CCAGCAGGGGGTGCA
0.0116
CCACAAGGGGTCGCT
0.0154
CCAGTGGAGGGCAGC
0.0233
ACTCTAGAGGGCACT
0.0248
CCACTAGGTGGCGTT
0.00611
CCACCAGGAGGAGCC
0.0166
CCAGTAGAGGGCACA
0.00569
CCACTTGGGGGCGCT
0.00569
yes