# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Apr 25 02:28:11 2025
# ------------------------------------------------

package:
  name: jcvi
  version: 1.5.4
source:
  sha256: 865974660e0cebfabe79e86bdb82d8454f01830b4bfd0f6ff2c8da6d33b0d756
  url: https://pypi.io/packages/source/j/jcvi/jcvi-1.5.4.tar.gz
build:
  entry_points:
    - jcvi = jcvi.cli:main
  number: '0'
  run_exports:
    - jcvi >=1.5.4,<2.0a0
  script: /opt/conda/conda-bld/jcvi_1745548339455/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/bin/python
    -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
  script_env:
    - SETUPTOOLS_SCM_PRETEND_VERSION=1.5.4
  string: py311h56f98c7_0
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-aarch64 2.43 h4c662bb_4
    - binutils_linux-aarch64 2.43 hf1166c9_4
    - gcc_impl_linux-aarch64 13.3.0 h80a1502_2
    - gcc_linux-aarch64 13.3.0 h1cd514b_10
    - kernel-headers_linux-aarch64 4.18.0 h05a177a_18
    - ld_impl_linux-aarch64 2.43 h80caac9_4
    - libgcc 14.2.0 he277a41_2
    - libgcc-devel_linux-aarch64 13.3.0 h0c07274_102
    - libgomp 14.2.0 he277a41_2
    - libsanitizer 13.3.0 ha58e236_2
    - libstdcxx 14.2.0 h3f4de04_2
    - sysroot_linux-aarch64 2.17 h68829e0_18
    - tzdata 2025b h78e105d_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h68df207_7
    - ca-certificates 2025.1.31 hbd8a1cb_1
    - cython 3.0.12 py311hc8540bd_0
    - editables 0.5 pyhd8ed1ab_1
    - hatch-vcs 0.4.0 pyhd8ed1ab_1
    - hatchling 1.27.0 pypyhd8ed1ab_0
    - importlib-metadata 8.6.1 pyha770c72_0
    - ld_impl_linux-aarch64 2.43 h80caac9_4
    - libblas 3.9.0 31_h1a9f1db_openblas
    - libcblas 3.9.0 31_hab92f65_openblas
    - libexpat 2.7.0 h5ad3122_0
    - libffi 3.4.6 he21f813_1
    - libgcc 14.2.0 he277a41_2
    - libgcc-ng 14.2.0 he9431aa_2
    - libgfortran 14.2.0 he9431aa_2
    - libgfortran5 14.2.0 hb6113d0_2
    - libgomp 14.2.0 he277a41_2
    - liblapack 3.9.0 31_h411afd4_openblas
    - liblzma 5.8.1 h86ecc28_0
    - libnsl 2.0.1 h31becfc_0
    - libopenblas 0.3.29 pthreads_h9d3fd7e_0
    - libsqlite 3.49.1 h5eb1b54_2
    - libstdcxx 14.2.0 h3f4de04_2
    - libstdcxx-ng 14.2.0 hf1166c9_2
    - libuuid 2.38.1 hb4cce97_0
    - libxcrypt 4.4.36 h31becfc_1
    - libzlib 1.3.1 h86ecc28_2
    - ncurses 6.5 ha32ae93_3
    - numpy 1.23.5 py311h7d6c6bb_0
    - openssl 3.5.0 hd08dc88_0
    - packaging 25.0 pyh29332c3_1
    - pathspec 0.12.1 pyhd8ed1ab_1
    - pip 25.0.1 pyh8b19718_0
    - pluggy 1.5.0 pyhd8ed1ab_1
    - python 3.11.12 h1683364_0_cpython
    - python_abi 3.11 7_cp311
    - readline 8.2 h8382b9d_2
    - setuptools 79.0.1 pyhff2d567_0
    - setuptools-scm 8.3.1 pyhd8ed1ab_0
    - tk 8.6.13 h194ca79_0
    - tomli 2.2.1 pyhd8ed1ab_1
    - trove-classifiers 2025.4.11.15 pyhd8ed1ab_0
    - typing-extensions 4.13.2 h0e9735f_0
    - typing_extensions 4.13.2 pyh29332c3_0
    - tzdata 2025b h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - zipp 3.21.0 pyhd8ed1ab_1
  run:
    - biopython
    - boto3
    - brewer2mpl
    - crossmap
    - deap
    - ete3
    - ftpretty
    - gffutils
    - goatools
    - imagemagick
    - jinja2
    - last
    - libgcc >=13
    - libmagic
    - matplotlib-base
    - more-itertools
    - natsort
    - networkx
    - numpy >=1.23.5,<2.0a0
    - pybedtools
    - pyefd
    - pypdf
    - pytesseract
    - python >=3.11,<3.12.0a0
    - python-graphviz
    - python_abi 3.11.* *_cp311
    - r-ggplot2
    - r-tinytex
    - rich
    - scikit-image
    - scipy
    - seaborn-base
    - ucsc-liftover
    - wand
    - webcolors
test:
  commands:
    - jcvi --help
  imports:
    - jcvi
    - jcvi.algorithms
    - jcvi.annotation
    - jcvi.apps
    - jcvi.assembly
    - jcvi.compara
    - jcvi.formats
    - jcvi.graphics
    - jcvi.projects
    - jcvi.utils
    - jcvi.utils.data
    - jcvi.variation
about:
  description: JCVI utility libraries
  dev_url: https://github.com/tanghaibao/jcvi
  doc_url: https://github.com/tanghaibao/jcvi/wiki
  home: https://github.com/tanghaibao/jcvi
  license: BSD-2-Clause
  license_family: BSD
  license_file: LICENSE
  summary: Python utility libraries on genome assembly, annotation, and comparative
    genomics.
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1002/imt2.211
