bin/CopomuS.py
bin/IntaRNA
bin/IntaRNA1
bin/IntaRNA2
bin/IntaRNA3
bin/IntaRNA_CSV_p-value.R
bin/IntaRNA_plotRegions.R
bin/IntaRNAduplex
bin/IntaRNAens
bin/IntaRNAexact
bin/IntaRNAhelix
bin/IntaRNAsTar
bin/IntaRNAseed
bin/copomus/IntaRNA.py
bin/copomus/__init__.py
bin/copomus/candidate_filters.py
bin/copomus/candidate_selectors.py
bin/copomus/indexing.py
bin/copomus/measures.py
bin/copomus/mutation.py
bin/copomus/mutation_generators.py
include/IntaRNA/Accessibility.h
include/IntaRNA/AccessibilityBasePair.h
include/IntaRNA/AccessibilityConstraint.h
include/IntaRNA/AccessibilityDisabled.h
include/IntaRNA/AccessibilityFromStream.h
include/IntaRNA/AccessibilityVrna.h
include/IntaRNA/HelixConstraint.h
include/IntaRNA/HelixHandler.h
include/IntaRNA/HelixHandlerIdxOffset.h
include/IntaRNA/HelixHandlerNoBulgeMax.h
include/IntaRNA/HelixHandlerUnpaired.h
include/IntaRNA/IndexRange.h
include/IntaRNA/IndexRangeList.h
include/IntaRNA/Interaction.h
include/IntaRNA/InteractionEnergy.h
include/IntaRNA/InteractionEnergyBasePair.h
include/IntaRNA/InteractionEnergyIdxOffset.h
include/IntaRNA/InteractionEnergyVrna.h
include/IntaRNA/InteractionRange.h
include/IntaRNA/NussinovHandler.h
include/IntaRNA/OutputConstraint.h
include/IntaRNA/OutputHandler.h
include/IntaRNA/OutputHandlerCsv.h
include/IntaRNA/OutputHandlerEnsemble.h
include/IntaRNA/OutputHandlerHub.h
include/IntaRNA/OutputHandlerInteractionList.h
include/IntaRNA/OutputHandlerText.h
include/IntaRNA/OutputStreamHandler.h
include/IntaRNA/OutputStreamHandlerSortedCsv.h
include/IntaRNA/PredictionTracker.h
include/IntaRNA/PredictionTrackerHub.h
include/IntaRNA/PredictionTrackerPairMinE.h
include/IntaRNA/PredictionTrackerProfileMinE.h
include/IntaRNA/PredictionTrackerProfileSpotProb.h
include/IntaRNA/PredictionTrackerSpotProb.h
include/IntaRNA/PredictionTrackerSpotProbAll.h
include/IntaRNA/Predictor.h
include/IntaRNA/PredictorMfe.h
include/IntaRNA/PredictorMfe2d.h
include/IntaRNA/PredictorMfe2dHelixBlockHeuristic.h
include/IntaRNA/PredictorMfe2dHelixBlockHeuristicSeed.h
include/IntaRNA/PredictorMfe2dHeuristic.h
include/IntaRNA/PredictorMfe2dHeuristicSeed.h
include/IntaRNA/PredictorMfe2dHeuristicSeedExtension.h
include/IntaRNA/PredictorMfe2dSeed.h
include/IntaRNA/PredictorMfe2dSeedExtension.h
include/IntaRNA/PredictorMfe2dSeedExtensionRIblast.h
include/IntaRNA/PredictorMfeEns.h
include/IntaRNA/PredictorMfeEns2d.h
include/IntaRNA/PredictorMfeEns2dHeuristic.h
include/IntaRNA/PredictorMfeEns2dHeuristicSeedExtension.h
include/IntaRNA/PredictorMfeEns2dSeedExtension.h
include/IntaRNA/PredictorMfeEnsSeedOnly.h
include/IntaRNA/PredictorMfeSeedOnly.h
include/IntaRNA/ReverseAccessibility.h
include/IntaRNA/RnaSequence.h
include/IntaRNA/SeedConstraint.h
include/IntaRNA/SeedHandler.h
include/IntaRNA/SeedHandlerExplicit.h
include/IntaRNA/SeedHandlerIdxOffset.h
include/IntaRNA/SeedHandlerMfe.h
include/IntaRNA/SeedHandlerNoBulge.h
include/IntaRNA/VrnaHandler.h
include/IntaRNA/general.h
include/IntaRNA/intarna_config.h
include/easylogging++.h
lib/libIntaRNA.a
lib/libeasylogging.a
lib/pkgconfig/IntaRNA.pc
