# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Nov 27 21:56:43 2024
# ------------------------------------------------

package:
  name: hisat2
  version: 2.2.1
source:
  patches:
    - 0001-Rename-VERSION-to-VERSION.txt.patch
    - simde-mr-c.patch
  sha256: f3f4f867d0a6b1f880d64efc19deaa5788c62050e0a4d614ce98b3492f702599
  url: https://github.com/DaehwanKimLab/hisat2/archive/v2.2.1.tar.gz
build:
  number: '7'
  run_exports: hisat2 >=2.2.1,<3.0a0
  string: h7021222_7
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-aarch64 2.43 h4c662bb_2
    - binutils_linux-aarch64 2.43 hf1166c9_2
    - gcc_impl_linux-aarch64 12.4.0 hfb8d6db_1
    - gcc_linux-aarch64 12.4.0 heb3b579_7
    - gxx_impl_linux-aarch64 12.4.0 h3c1ec91_1
    - gxx_linux-aarch64 12.4.0 h3f57e68_7
    - kernel-headers_linux-aarch64 4.18.0 h05a177a_18
    - ld_impl_linux-aarch64 2.43 h80caac9_2
    - libgcc 14.2.0 he277a41_1
    - libgcc-devel_linux-aarch64 12.4.0 h7b3af7c_101
    - libgomp 14.2.0 he277a41_1
    - libsanitizer 12.4.0 h469570c_1
    - libstdcxx 14.2.0 h3f4de04_1
    - libstdcxx-devel_linux-aarch64 12.4.0 h7b3af7c_101
    - make 4.4.1 h2a6d0cb_2
    - sysroot_linux-aarch64 2.17 h5b4a56d_18
    - tzdata 2024b hc8b5060_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - libgcc 14.2.0 he277a41_1
    - libgomp 14.2.0 he277a41_1
    - libstdcxx 14.2.0 h3f4de04_1
  run:
    - libgcc >=12
    - libstdcxx >=12
    - perl
    - python >3.5
test:
  commands:
    - hisat2 --help | grep -F 2.2.1
about:
  description: HISAT2 is a fast and sensitive alignment program for mapping next-generation
    sequencing reads (both DNA and RNA) to a population of human genomes as well as
    to a single reference genome.
  dev_url: https://github.com/DaehwanKimLab/hisat2
  doc_url: https://daehwankimlab.github.io/hisat2/manual/
  home: http://daehwankimlab.github.io/hisat2
  license: GPL-3.0
  license_family: GPL
  license_file: LICENSE
  summary: Graph-based alignment of next generation sequencing reads to a population
    of genomes.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:HISAT2
    - doi:10.1038/nmeth.3317
    - doi:10.1038/s41587-019-0201-4
    - usegalaxy-eu:hisat2
  notes: Pre-built indices for HISAT2 can be downloaded from https://daehwankimlab.github.io/hisat2/download/.
