# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Jul 11 16:31:42 2024
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.4
source:
  sha256: 841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.4.tar.gz
build:
  number: '2'
  run_exports:
    - bowtie2 >=2.5.4,<3.0a0
  string: ha74b5d5_2
requirements:
  build:
    - _openmp_mutex 4.5 2_gnu
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_16
    - binutils_impl_linux-aarch64 2.40 hf54a868_7
    - binutils_linux-aarch64 2.40 h1f91aba_9
    - bzip2 1.0.8 h31becfc_5
    - c-ares 1.32.0 h68df207_0
    - ca-certificates 2024.7.4 hcefe29a_0
    - cmake 3.30.0 h7042e5d_0
    - gcc_impl_linux-aarch64 12.3.0 h3d98823_13
    - gcc_linux-aarch64 12.3.0 ha52a6ea_9
    - git 2.45.2 pl5321h011b5c6_1
    - gxx_impl_linux-aarch64 12.3.0 hba91e99_13
    - gxx_linux-aarch64 12.3.0 h9d1f256_9
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_16
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.3 h50a48e9_0
    - ld_impl_linux-aarch64 2.40 h9fc2d93_7
    - libcurl 8.8.0 h4e8248e_1
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h31becfc_2
    - libexpat 2.6.2 h2f0025b_0
    - libgcc-devel_linux-aarch64 12.3.0 h6144e03_113
    - libgcc-ng 14.1.0 he277a41_0
    - libgomp 14.1.0 he277a41_0
    - libiconv 1.17 h31becfc_2
    - libnghttp2 1.58.0 hb0e430d_1
    - libsanitizer 12.3.0 h57e2e72_13
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 12.3.0 h6144e03_113
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libuv 1.48.0 h31becfc_0
    - libxcrypt 4.4.36 h31becfc_1
    - libzlib 1.3.1 h68df207_1
    - make 4.3 h309ac5b_1
    - ncurses 6.5 h0425590_0
    - openssl 3.3.1 h68df207_1
    - pcre2 10.44 h070dd5b_0
    - perl 5.32.1 7_h31becfc_perl5
    - rhash 1.4.4 h31becfc_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_16
    - tzdata 2024a h0c530f3_0
    - xz 5.2.6 h9cdd2b7_0
    - zstd 1.5.6 h02f22dd_0
  host:
    - _openmp_mutex 4.5 2_gnu
    - icu 73.2 h787c7f5_0
    - libgcc-ng 14.1.0 he277a41_0
    - libgomp 14.1.0 he277a41_0
    - libhwloc 2.11.0 default_h3030c0e_1000
    - libiconv 1.17 h31becfc_2
    - libstdcxx-ng 14.1.0 h3f4de04_0
    - libxml2 2.12.7 h49dc7a2_1
    - libzlib 1.2.13 h68df207_6
    - tbb 2021.12.0 h70be974_2
    - tbb-devel 2021.12.0 h08b647a_2
    - xz 5.2.6 h9cdd2b7_0
    - zlib 1.2.13 h68df207_6
    - zstd 1.5.6 h02f22dd_0
  run:
    - _openmp_mutex >=4.5
    - libgcc-ng >=12
    - libgomp
    - libstdcxx-ng >=12
    - libzlib >=1.2.13,<2.0a0
    - perl
    - python
    - tbb >=2021.12.0
    - zstd >=1.5.6,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2 --version | grep -q "bowtie2-align-s version [0-9]"
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  dev_url: https://github.com/BenLangmead/bowtie2
  doc_url: https://github.com/BenLangmead/bowtie2/blob/master/README.md
  home: https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: A fast and sensitive gapped read aligner.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
