Package: Rbowtie2
Type: Package
Title: An R Wrapper for Bowtie2 and AdapterRemoval
Version: 2.12.3
Date: 2021-10-5
Authors@R: 
    c(person(given = "Zheng", family = "Wei", role = c("aut","cre"), 
            email = "wzweizheng@qq.com"),
    person(given = "Wei", family = "Zhang", role = c("aut"), 
            email = " weizhang0505@126.com"))
Description: This package provides an R wrapper of the popular bowtie2 
    sequencing reads aligner and AdapterRemoval, a convenient tool for rapid 
    adapter trimming, identification, and read merging. The package contains
    wrapper functions that allow for genome indexing and alignment to those 
    indexes. The package also allows for the creation of .bam files via Rsamtools.
License: GPL (>= 3)
Depends: R (>= 4.1.0)
Encoding: UTF-8
Suggests: knitr, testthat (>= 3.0.0), rmarkdown
Imports: magrittr, Rsamtools
SystemRequirements: C++11, GNU make, samtools
Archs: x64
RoxygenNote: 7.1.1
biocViews: Sequencing, Alignment, Preprocessing
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/Rbowtie2
git_branch: RELEASE_3_20
git_last_commit: 52ab8a6
git_last_commit_date: 2025-01-19
Repository: Bioconductor 3.20
Date/Publication: 2025-01-20
NeedsCompilation: yes
Packaged: 2025-01-20 23:41:22 UTC; biocbuild
Author: Zheng Wei [aut, cre],
  Wei Zhang [aut]
Maintainer: Zheng Wei <wzweizheng@qq.com>
Built: R 4.4.3; aarch64-conda-linux-gnu; 2025-07-15 21:47:55 UTC; unix
