Package: DMRcaller
Type: Package
Title: Differentially Methylated Regions caller
Version: 1.34.0
Date: 2021-11-17
Authors@R: c(person(given="Nicolae Radu", family="Zabet", role =
        c("aut","cre"), email = "n.r.zabet@gen.cam.ac.uk"),
        person(given="Jonathan", family="Tsang", role = "aut", email =
        "jmft2@cam.ac.uk"), person(given="Alessandro", family="Greco",
        role = "aut", email = "apgrec@essex.ac.uk"), person(given="Ryan",
        family="Merritt", role = "aut", email = "rmerri@essex.ac.uk"))
Author: Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>, Jonathan
        Michael Foonlan Tsang <jmft2@cam.ac.uk>, Alessandro
        Pio Greco <apgrec@essex.ac.uk> and Ryan Merritt <rmerri@essex.ac.uk>
Maintainer: Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>
Description: Uses Bisulfite sequencing data in two conditions and
        identifies differentially methylated regions between the
        conditions in CG and non-CG context. The input is the CX report
        files produced by Bismark and the output is a list of DMRs
        stored as GRanges objects.
License: GPL-3
LazyLoad: yes
Imports: parallel, Rcpp, RcppRoll, betareg, grDevices, graphics,
        methods, stats, utils
Depends: R (>= 3.5), GenomicRanges, IRanges, S4Vectors (>= 0.23.10)
Suggests: knitr, RUnit, BiocGenerics
biocViews: DifferentialMethylation, DNAMethylation, Software,
        Sequencing, Coverage
VignetteBuilder: knitr
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/DMRcaller
git_branch: RELEASE_3_18
git_last_commit: 7b214e9
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
Packaged: 2023-10-24 21:02:08 UTC; biocbuild
Built: R 4.3.3; ; 2024-05-09 14:19:08 UTC; unix
