# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jun 30 09:30:48 2023
# ------------------------------------------------

package:
  name: whatshap
  version: '2.0'
source:
  sha256: a23949e692047ab0549ea3309c2b70d95de17a01d00cbc8b2f4c8baf467f8e6a
  url: https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz
build:
  number: '0'
  script: python -m pip install --no-deps --ignore-installed .
  string: py310h0dbaff4_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 hf600244_0
    - binutils_linux-64 2.40 hbdbef99_0
    - gcc_impl_linux-64 12.3.0 he2b93b0_0
    - gcc_linux-64 12.3.0 h76fc315_0
    - gxx_impl_linux-64 12.3.0 he2b93b0_0
    - gxx_linux-64 12.3.0 h8a814eb_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.40 h41732ed_0
    - libgcc-devel_linux-64 12.3.0 h8bca6fd_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgomp 13.1.0 he5830b7_0
    - libsanitizer 12.3.0 h0f45ef3_0
    - libstdcxx-devel_linux-64 12.3.0 h8bca6fd_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2023.5.7 hbcca054_0
    - cython 0.29.35 py310hc6cd4ac_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 13.1.0 he5830b7_0
    - libgomp 13.1.0 he5830b7_0
    - libnsl 2.0.0 h7f98852_0
    - libsqlite 3.42.0 h2797004_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - libuuid 2.38.1 h0b41bf4_0
    - libzlib 1.2.13 hd590300_5
    - ncurses 6.4 hcb278e6_0
    - openssl 3.1.1 hd590300_1
    - packaging 23.1 pyhd8ed1ab_0
    - pip 23.1.2 pyhd8ed1ab_0
    - python 3.10.12 hd12c33a_0_cpython
    - python_abi 3.10 3_cp310
    - readline 8.2 h8228510_1
    - setuptools 68.0.0 pyhd8ed1ab_0
    - setuptools-scm 7.1.0 pyhd8ed1ab_0
    - tk 8.6.12 h27826a3_0
    - tomli 2.0.1 pyhd8ed1ab_0
    - typing-extensions 4.7.0 hd8ed1ab_0
    - typing_extensions 4.7.0 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
  run:
    - biopython >=1.73
    - htslib
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - networkx >=2.4
    - pulp >=2
    - pyfaidx >=0.5.5.2
    - pysam >=0.18
    - python >=3.10,<3.11.0a0
    - python_abi 3.10.* *_cp310
    - scipy
    - xopen >=1.2.0
test:
  commands:
    - whatshap --help > /dev/null
  imports:
    - whatshap
about:
  home: https://whatshap.readthedocs.io/
  license: MIT License
  summary: phase genomic variants using DNA sequencing reads (haplotype assembly)
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:whatshap
    - doi:10.1089/cmb.2014.0157
  recipe-maintainers:
    - marcelm
