##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=20160625
##source=consensus-genotypes-10X-freebayes.py
##commandline="(whatshap 0.12+79.g8d81bee) phase --indels --distrust-genotypes --output-read-list whatshap/consensus/pacbioblasr/single/Y117.chr22.used-reads.tsv --changed-genotype-list whatshap/consensus/pacbioblasr/single/Y117.chr22.genotype-changes.tsv --reference ref/GRCh38_full_analysis_set_plus_decoy_hla.fa -o whatshap/consensus/pacbioblasr/single/Y117.chr22.vcf consensus/freebayes_10X/Y117.chr22.vcf pacbio/NA19239.chr22.bam pacbio/NA19238.chr22.bam pacbio/NA19240.chr22.bam"
##bcftools_viewVersion=1.6+htslib-1.6
##bcftools_viewCommand=view -s NA19240 --phased vcf/NA19240.chr22.tmp.vcf.gz; Date=Tue Jul 17 15:11:30 2018
##CL=vcffilter -i NA19240.chr22.vcf.gz -o NA19240.chr22.only-het.vcf.gz --remove-same-as-ref --remove-hom
##contig=<ID=chr22>
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set identifier">
##bcftools_mergeVersion=1.9+htslib-1.9
##bcftools_mergeCommand=merge -0 -o multisample.chr22.42M.5k.vcf polyploid.human1.chr22.42M.5k.vcf.gz polyploid.human2.chr22.42M.5k.vcf.gz; Date=Tue Jan 21 15:01:01 2020
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA19240	HG00514
chr22	42000367	.	G	A	.	.	AN=4;AC=1	GT:PS	0|1:41064699	0/0:.
chr22	42001022	.	A	G	.	.	AN=4;AC=1	GT:PS	0|1:41064699	0/0:.
chr22	42001465	.	G	A	.	.	AN=4;AC=1	GT:PS	0|1:41064699	0|1:42001465
chr22	42002015	.	G	A	.	.	AN=4;AC=1	GT:PS	1|0:41064699	0/0:.
chr22	42002191	.	T	C	.	.	AN=4;AC=1	GT:PS	0|1:41064699	0/0:.
chr22	42002471	.	C	T	.	.	AN=4;AC=1	GT:PS	1|0:41064699	1|0:42002471
chr22	42002825	.	C	T	.	.	AN=4;AC=1	GT:PS	1|0:41064699	0/0:.
chr22	42003021	.	G	C	.	.	AN=4;AC=1	GT:PS	1|0:41064699	0/0:.
chr22	42003543	.	T	A	.	.	AN=4;AC=1	GT:PS	0|1:41064699	0/0:.
