##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=20160603
##source=consensus-genotypes-10X-freebayes.py
##commandline="(whatshap 0.12+61.gc9d9c22) phase --indels --distrust-genotypes --output-read-list whatshap/consensus/pacbioblasr/single/SH032.chr22.used-reads.tsv --changed-genotype-list whatshap/consensus/pacbioblasr/single/SH032.chr22.genotype-changes.tsv --reference ref/GRCh38_full_analysis_set_plus_decoy_hla.fa -o whatshap/consensus/pacbioblasr/single/SH032.chr22.vcf consensus/freebayes_10X/SH032.chr22.vcf pacbio/HG00512.chr22.bam pacbio/HG00513.chr22.bam pacbio/HG00514.chr22.bam"
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set identifier">
##contig=<ID=chr22>
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##bcftools_viewVersion=1.6+htslib-1.6
##bcftools_viewCommand=view -s HG00514 --phased vcf/HG00514.chr22.tmp.vcf.gz; Date=Tue Jul 17 15:11:30 2018
##bcftools_mergeVersion=1.6+htslib-1.6
##bcftools_mergeCommand=merge --missing-to-ref vcf/HG00514.chr22.vcf.gz vcf/NA19240.chr22.vcf.gz; Date=Tue Jul 17 16:20:29 2018
##bcftools_viewVersion=1.9+htslib-1.9
##bcftools_viewCommand=view --regions chr22:20000000-21000000 -o ../data/red20-21_polyploid.chr22.vcf ../data/polyploid.chr22.vcf.gz; Date=Wed Feb 20 13:56:17 2019
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00514_NA19240
chr22	20000241	.	A	C	.	.	AN=4;AC=3	GT:PS	1|0|1|1:20000000
chr22	20000722	.	G	A	.	.	AN=4;AC=2	GT:PS	1|0|1|0:20000000
chr22	20000735	.	G	T	.	.	AN=4;AC=0	GT:PS	0|0|0:20000000
chr22	20000994	.	G	C	.	.	AN=4;AC=3	GT:PS	1|0|1|1:20000000
chr22	20001153	.	T	C	.	.	AN=4;AC=3	GT:PS	1|0|1|1:20001000
chr22	20002119	.	A	G	.	.	AN=4;AC=1	GT:PS	0|0|0|1:20001000
chr22	20002367	.	C	T	.	.	AN=4;AC=1	GT:PS	0|0:20001000
chr22	20003266	.	G	T	.	.	AN=4;AC=1	GT:PS	0|0|0|1:20001000