File List
Here is a list of all documented files with brief descriptions:

H |
2Dfold.h |
2Dpfold.h |
ali_plex.h |
alifold.h | Compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
aln_util.h |
cofold.h | MFE version of cofolding routines
convert_epars.h | Functions and definitions for energy parameter file format conversion
data_structures.h | All datastructures and typedefs shared among the Vienna RNA Package can be found here
dist_vars.h | Global variables for Distance-Package
duplex.h | Duplex folding function declarations..
edit_cost.h | Global variables for Edit Costs included by treedist.c and stringdist.c
energy_const.h |
energy_par.h |
findpath.h | Compute direct refolding paths between two secondary structures
fold.h | MFE calculations and energy evaluations for single RNA sequences
fold_vars.h | Here all all declarations of the global variables used throughout RNAlib
gquad.h | Various functions related to G-quadruplex computations
inverse.h | Inverse folding routines
Lfold.h | Predicting local MFE structures of large sequences
loop_energies.h | Energy evaluation for MFE and partition function calculations
LPfold.h | Function declarations of partition function variants of the Lfold algorithm
MEA.h | Computes a MEA (maximum expected accuracy) structure
mm.h | Several Maximum Matching implementations
move_set.h |
naview.h |
pair_mat.h |
params.h |
part_func.h | Partition function of single RNA sequences
part_func_co.h | Partition function for two RNA sequences
part_func_up.h | Partition Function Cofolding as stepwise process
PKplex.h |
plex.h |
plot_layouts.h | Secondary structure plot layout algorithms
ProfileAln.h |
profiledist.h |
PS_dot.h | Various functions for plotting RNA secondary structures, dot-plots and other visualizations
read_epars.h |
ribo.h |
RNAstruct.h | Parsing and Coarse Graining of Structures
snofold.h |
snoop.h |
stringdist.h | Functions for String Alignment
subopt.h | RNAsubopt and density of states declarations
svm_utils.h |
treedist.h | Functions for Tree Edit Distances
utils.h | Various utility- and helper-functions used throughout the Vienna RNA package
lib |
1.8.4_epars.h | Free energy parameters for parameter file conversion
1.8.4_intloops.h | Free energy parameters for interior loop contributions needed by the parameter file conversion functions
intl11.h |
intl11dH.h |
intl21.h |
intl21dH.h |
intl22.h |
intl22dH.h |
list.h |
mainpage.h |