part_func_co.h
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#ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_CO_H__
#define __VIENNA_RNA_PACKAGE_PART_FUNC_CO_H__
#include "data_structures.h"
#ifdef __GNUC__
#define DEPRECATED(func) func __attribute__ ((deprecated))
#else
#define DEPRECATED(func) func
#endif
extern int mirnatog;
extern double F_monomer[2];
cofoldF co_pf_fold( char *sequence,
char *structure);
cofoldF co_pf_fold_par( char *sequence,
char *structure,
pf_paramT *parameters,
int calculate_bppm,
int is_constrained);
FLT_OR_DBL *export_co_bppm(void);
void free_co_pf_arrays(void);
void update_co_pf_params(int length);
void update_co_pf_params_par(int length,
pf_paramT *parameters);
void compute_probabilities(double FAB,
double FEA,
double FEB,
struct plist *prAB,
struct plist *prA,
struct plist *prB,
int Alength);
ConcEnt *get_concentrations(double FEAB,
double FEAA,
double FEBB,
double FEA,
double FEB,
double *startconc);
/*
#################################################
# DEPRECATED FUNCTIONS #
#################################################
*/
DEPRECATED(plist *get_plist( struct plist *pl,
int length,
double cut_off));
DEPRECATED(void init_co_pf_fold(int length));
#endif