subopt.h File Reference
Enumerating Suboptimal Structures

RNAsubopt and density of states declarations. More...

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## Functions

SOLUTION * | subopt (char *seq, char *structure, int delta, FILE *fp)
| Returns list of subopt structures or writes to fp. More...
SOLUTION * | subopt_par (char *seq, char *structure, paramT *parameters, int delta, int is_constrained, int is_circular, FILE *fp)
| Returns list of subopt structures or writes to fp.
SOLUTION * | subopt_circ (char *seq, char *sequence, int delta, FILE *fp)
| Returns list of circular subopt structures or writes to fp. More...

## Variables

int | subopt_sorted
| Sort output by energy.
double | print_energy
| printing threshold for use with logML
int | density_of_states [MAXDOS+1]
| The Density of States. More...

## Detailed Description

RNAsubopt and density of states declarations.