cofold.h
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#ifndef __VIENNA_RNA_PACKAGE_COFOLD_H__
#define __VIENNA_RNA_PACKAGE_COFOLD_H__
#include "data_structures.h"
#ifdef __GNUC__
#define DEPRECATED(func) func __attribute__ ((deprecated))
#else
#define DEPRECATED(func) func
#endif
float cofold( const char *sequence,
char *structure);
float cofold_par( const char *string,
char *structure,
paramT *parameters,
int is_constrained);
void free_co_arrays(void);
void update_cofold_params(void);
void update_cofold_params_par(paramT *parameters);
void export_cofold_arrays_gq( int **f5_p,
int **c_p,
int **fML_p,
int **fM1_p,
int **fc_p,
int **ggg_p,
int **indx_p,
char **ptype_p);
void export_cofold_arrays(int **f5_p,
int **c_p,
int **fML_p,
int **fM1_p,
int **fc_p,
int **indx_p,
char **ptype_p);
SOLUTION *zukersubopt(const char *string);
SOLUTION *zukersubopt_par( const char *string,
paramT *parameters);
void get_monomere_mfes( float *e1,
float *e2);
DEPRECATED(void initialize_cofold(int length));
#endif