subopt.h
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/* subopt.h */
#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
#define __VIENNA_RNA_PACKAGE_SUBOPT_H__
#include "data_structures.h"
#define MAXDOS 1000
SOLUTION *subopt (char *seq,
char *structure,
int delta,
FILE *fp);
SOLUTION *subopt_par( char *seq,
char *structure,
paramT *parameters,
int delta,
int is_constrained,
int is_circular,
FILE *fp);
SOLUTION *subopt_circ ( char *seq,
char *sequence,
int delta,
FILE *fp);
extern int subopt_sorted;
extern double print_energy;
extern int density_of_states[MAXDOS+1];
/* End of group dos */
#endif