LPfold.h
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#ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
#define __VIENNA_RNA_PACKAGE_LPFOLD_H__
#include "data_structures.h"
#ifdef __GNUC__
#define DEPRECATED(func) func __attribute__ ((deprecated))
#else
#define DEPRECATED(func) func
#endif
void update_pf_paramsLP(int length);
void update_pf_paramsLP_par(int length, pf_paramT *parameters);
plist *pfl_fold(char *sequence,
int winSize,
int pairSize,
float cutoffb,
double **pU,
struct plist **dpp2,
FILE *pUfp,
FILE *spup);
plist *pfl_fold_par(char *sequence,
int winSize,
int pairSize,
float cutoffb,
double **pU,
struct plist **dpp2,
FILE *pUfp,
FILE *spup,
pf_paramT *parameters);
void putoutpU_prob_par( double **pU,
int length,
int ulength,
FILE *fp,
int energies,
pf_paramT *parameters);
void putoutpU_prob(double **pU,
int length,
int ulength,
FILE *fp,
int energies);
void putoutpU_prob_bin_par( double **pU,
int length,
int ulength,
FILE *fp,
int energies,
pf_paramT *parameters);
void putoutpU_prob_bin(double **pU,
int length,
int ulength,
FILE *fp,
int energies);
DEPRECATED(void init_pf_foldLP(int length));
#endif