RNAlib-2.1.8

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Data Structures | Macros
data_structures.h File Reference

All datastructures and typedefs shared among the Vienna RNA Package can be found here. More...

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## Data Structures

struct | plist
| this datastructure is used as input parameter in functions of PS_dot.h and others More...
struct | cpair
| this datastructure is used as input parameter in functions of PS_dot.c More...
struct | COORDINATE
| this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE More...
struct | sect
| Stack of partial structures for backtracking. More...
struct | bondT
| Base pair. More...
struct | bondTEn
| Base pair with associated energy. More...
struct | model_detailsT
| The data structure that contains the complete model details used throughout the calculations. More...
struct | paramT
| The datastructure that contains temperature scaled energy parameters. More...
struct | pf_paramT
| The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More...
struct | PAIR
| Base pair data structure used in subopt.c. More...
struct | INTERVAL
| Sequence interval stack element used in subopt.c. More...
struct | SOLUTION
| Solution element from subopt.c. More...
struct | cofoldF
struct | ConcEnt
struct | pairpro
struct | pair_info
| A base pair info structure. More...
struct | move_t
struct | intermediate_t
struct | path_t
struct | pu_contrib
| contributions to p_u More...
struct | interact
struct | pu_out
| Collection of all free_energy of beeing unpaired values for output. More...
struct | constrain
| constraints for cofolding More...
struct | duplexT
struct | folden
struct | snoopT
struct | dupVar
struct | TwoDfold_solution
| Solution element returned from TwoDfoldList. More...
struct | TwoDfold_vars
| Variables compound for 2Dfold MFE folding. More...
struct | TwoDpfold_solution
| Solution element returned from TwoDpfoldList. More...
struct | TwoDpfold_vars
| Variables compound for 2Dfold partition function folding. More...

## Macros

#define | MAXALPHA 20
| Maximal length of alphabet.
#define | MAXDOS 1000
| Maximum density of states discretization for subopt.

## Detailed Description

All datastructures and typedefs shared among the Vienna RNA Package can be found here.