RNAlib-2.1.8

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fold_vars.h
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1 #ifndef __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
2 #define __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
3
4 #include "data_structures.h"
5
12 #define PUBLIC
13 #define PRIVATE static
14
18 extern int fold_constrained;
19
27 extern int noLonelyPairs;
28
50 extern int dangles;
51
55 extern int noGU;
56
60 extern int no_closingGU;
61
67 extern int tetra_loop;
68
76 extern int energy_set;
77
81 extern int circ;
82
86 extern int csv;
87
91 extern int oldAliEn;
95 extern int ribo;
96
101 extern char *RibosumFile;
102
110 extern char *nonstandards;
111
118 extern double temperature;
119
124 extern int james_rule;
125
129 extern int logML;
130
142 extern int cut_point;
143
150 extern bondT *base_pair;
151
157 extern FLT_OR_DBL *pr;
158
165 extern int *iindx;
166
178 extern double pf_scale;
179
186 extern int do_backtrack;
187
195 extern char backtrack_type;
196
200 extern int gquad;
201
205 extern int canonicalBPonly;
206
207 char * option_string(void);
208
219 void set_model_details(model_detailsT *md);
220
221 #endif