RNAlib-2.1.8

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H Directory Reference
Directory dependency graph for /home/mescalin/www/tbi/htdocs/RNA/ViennaRNA/H/:

## Files

file | 2Dfold.h [code]
file | 2Dpfold.h [code]
file | ali_plex.h [code]
file | alifold.h [code]
| compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
file | aln_util.h [code]
file | cofold.h [code]
| MFE version of cofolding routines.
file | convert_epars.h [code]
| Functions and definitions for energy parameter file format conversion.
file | data_structures.h [code]
| All datastructures and typedefs shared among the Vienna RNA Package can be found here.
file | dist_vars.h [code]
| Global variables for Distance-Package.
file | duplex.h [code]
| Duplex folding function declarations...
file | edit_cost.h [code]
| global variables for Edit Costs included by treedist.c and stringdist.c
file | energy_const.h [code]
file | energy_par.h [code]
file | findpath.h [code]
| Compute direct refolding paths between two secondary structures.
file | fold.h [code]
| MFE calculations and energy evaluations for single RNA sequences.
file | fold_vars.h [code]
| Here all all declarations of the global variables used throughout RNAlib.
file | gquad.h [code]
| Various functions related to G-quadruplex computations.
file | inverse.h [code]
| Inverse folding routines.
file | Lfold.h [code]
| Predicting local MFE structures of large sequences.
file | loop_energies.h [code]
| Energy evaluation for MFE and partition function calculations.
file | LPfold.h [code]
| Function declarations of partition function variants of the Lfold algorithm.
file | MEA.h [code]
| Computes a MEA (maximum expected accuracy) structure.
file | mm.h [code]
| Several Maximum Matching implementations.
file | move_set.h [code]
file | naview.h [code]
file | pair_mat.h [code]
file | params.h [code]
file | part_func.h [code]
| Partition function of single RNA sequences.
file | part_func_co.h [code]
| Partition function for two RNA sequences.
file | part_func_up.h [code]
| Partition Function Cofolding as stepwise process.
file | PKplex.h [code]
file | plex.h [code]
file | plot_layouts.h [code]
| Secondary structure plot layout algorithms.
file | ProfileAln.h [code]
file | profiledist.h [code]
file | PS_dot.h [code]
| Various functions for plotting RNA secondary structures, dot-plots and other visualizations.
file | read_epars.h [code]
file | ribo.h [code]
file | RNAstruct.h [code]
| Parsing and Coarse Graining of Structures.
file | snofold.h [code]
file | snoop.h [code]
file | stringdist.h [code]
| Functions for String Alignment.
file | subopt.h [code]
| RNAsubopt and density of states declarations.
file | svm_utils.h [code]
file | treedist.h [code]
| Functions for Tree Edit Distances.
file | utils.h [code]
| Various utility- and helper-functions used throughout the Vienna RNA package.