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subopt.h
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1 /* subopt.h */
2 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
3 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
4
5 #include "data_structures.h"
6
7 #define MAXDOS 1000
8
43 SOLUTION *subopt (char *seq,
44 char *structure,
45 int delta,
46 FILE *fp);
47
53 SOLUTION *subopt_par( char *seq,
54 char *structure,
55 paramT *parameters,
56 int delta,
57 int is_constrained,
58 int is_circular,
59 FILE *fp);
60
75 SOLUTION *subopt_circ ( char *seq,
76 char *sequence,
77 int delta,
78 FILE *fp);
79
86 extern int subopt_sorted;
87
88
95 extern double print_energy;
96
113 extern int density_of_states[MAXDOS+1];
114 /* End of group dos */
116
117 #endif