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part_func_up.h
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1 #ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
2 #define __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
3
4 #include "data_structures.h"
5
6 #define RNA_UP_MODE_1 1U
7 #define RNA_UP_MODE_2 2U
8 #define RNA_UP_MODE_3 4U
9
55 pu_contrib *pf_unstru(char *sequence,
56 int max_w);
57
100 interact *pf_interact(const char *s1,
101 const char *s2,
102 pu_contrib *p_c,
103 pu_contrib *p_c2,
104 int max_w,
105 char *cstruc,
106 int incr3,
107 int incr5);
108
112 void free_interact(interact *pin);
113
117 int Up_plot(pu_contrib *p_c,
118 pu_contrib *p_c_sh,
119 interact *pint,
120 char *ofile,
121 int **unpaired_values,
122 char *select_contrib,
123 char *head,
124 unsigned int mode);
125
129 pu_contrib *get_pu_contrib_struct( unsigned int n,
130 unsigned int w);
131
135 void free_pu_contrib_struct(pu_contrib *pu);
136
141 #endif