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ProfileAln.h
1 #ifndef __VIENNA_RNA_PACKAGE_PROFILEALN_H__
2 #define __VIENNA_RNA_PACKAGE_PROFILEALN_H__
3
4 float profile_aln(const float *T1,
5 const char *seq1,
6 const float *T2,
7 const char *seq2);
8
9 int set_paln_params(double gap_open,
10 double gap_ext,
11 double seqweight,
12 int free_ends);
13
14 #endif