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ali_plex.h
1 #ifndef __VIENNA_RNA_PACKAGE_ALI_PLEX_H__
2 #define __VIENNA_RNA_PACKAGE_ALI_PLEX_H__
3
4 #include "data_structures.h"
8 duplexT** aliLduplexfold( const char *s1[],
9 const char *s2[],
10 const int threshold,
11 const int extension_cost,
12 const int alignment_length,
13 const int delta,
14 const int fast,
15 const int il_a,
16 const int il_b,
17 const int b_a,
18 const int b_b);
22 duplexT** aliLduplexfold_XS(const char* s1[],
23 const char* s2[],
24 const int **access_s1,
25 const int **access_s2,
26 const int threshold,
27 const int alignment_length,
28 const int delta,
29 const int fast,
30 const int il_a,
31 const int il_b,
32 const int b_a,
33 const int b_b);
34
35 /*
36 extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost);
37 extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1,
38 const int **access_s2, const int i_pos, const int j_pos, const int threshold);
39 */
40 #endif