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PS_dot.h
Go to the documentation of this file.
1 #ifndef __VIENNA_RNA_PACKAGE_PS_DOT_H__
2 #define __VIENNA_RNA_PACKAGE_PS_DOT_H__
3
4 #include "data_structures.h"
5 #include "plot_layouts.h"
6
7 #ifdef __GNUC__
8 #define DEPRECATED(func) func __attribute__ ((deprecated))
9 #else
10 #define DEPRECATED(func) func
11 #endif
12
19 /* write PostScript drawing of structure to file with annotation */
20 int PS_rna_plot_snoop_a(char *string,
21 char *structure,
22 char *ssfile,
23 int *relative_access,
24 const char *seqs[]);
25
38 int PS_rna_plot(char *string,
39 char *structure,
40 char *file);
41
60 int PS_rna_plot_a(char *string,
61 char *structure,
62 char *file,
63 char *pre,
64 char *post);
65
66 int PS_rna_plot_a_gquad(char *string,
67 char *structure,
68 char *ssfile,
69 char *pre,
70 char *post);
71
84 int gmlRNA( char *string,
85 char *structure,
86 char *ssfile,
87 char option);
88
99 int ssv_rna_plot( char *string,
100 char *structure,
101 char *ssfile);
102
111 int svg_rna_plot( char *string,
112 char *structure,
113 char *ssfile);
114
123 int xrna_plot(char *string,
124 char *structure,
125 char *ssfile);
126
127 int PS_color_dot_plot(char *string,
128 cpair *pi,
129 char *filename);
130
131 int PS_color_dot_plot_turn( char *seq,
132 cpair *pi,
133 char *filename,
134 int winSize);
135
155 int PS_dot_plot_list( char *seq,
156 char *filename,
157 plist *pl,
158 plist *mf,
159 char *comment);
160
161 int PS_dot_plot_turn( char *seq,
162 struct plist *pl,
163 char *filename,
164 int winSize);
165
166 int PS_color_aln( const char *structure,
167 const char *filename,
168 const char *seqs[],
169 const char *names[]);
170
174 int aliPS_color_aln(const char *structure,
175 const char *filename,
176 const char *seqs[],
177 const char *names[]);
178
179
195 DEPRECATED(int PS_dot_plot( char *string,
196 char *file));
197 #endif