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LPfold.h
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1 #ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
2 #define __VIENNA_RNA_PACKAGE_LPFOLD_H__
3
4 #include "data_structures.h"
5
6 #ifdef __GNUC__
7 #define DEPRECATED(func) func __attribute__ ((deprecated))
8 #else
9 #define DEPRECATED(func) func
10 #endif
11
29 void update_pf_paramsLP(int length);
30
37 void update_pf_paramsLP_par(int length, pf_paramT *parameters);
38
76 plist *pfl_fold(char *sequence,
77 int winSize,
78 int pairSize,
79 float cutoffb,
80 double **pU,
81 struct plist **dpp2,
82 FILE *pUfp,
83 FILE *spup);
84
91 plist *pfl_fold_par(char *sequence,
92 int winSize,
93 int pairSize,
94 float cutoffb,
95 double **pU,
96 struct plist **dpp2,
97 FILE *pUfp,
98 FILE *spup,
99 pf_paramT *parameters);
100
101
102 void putoutpU_prob_par( double **pU,
103 int length,
104 int ulength,
105 FILE *fp,
106 int energies,
107 pf_paramT *parameters);
108
109
124 void putoutpU_prob(double **pU,
125 int length,
126 int ulength,
127 FILE *fp,
128 int energies);
129
130 void putoutpU_prob_bin_par( double **pU,
131 int length,
132 int ulength,
133 FILE *fp,
134 int energies,
135 pf_paramT *parameters);
136
151 void putoutpU_prob_bin(double **pU,
152 int length,
153 int ulength,
154 FILE *fp,
155 int energies);
156
162 DEPRECATED(void init_pf_foldLP(int length));
163
164 #endif