VCFANNOTATEGENOTYPES(1)

NAME

vcfannotategenotypes

SYNOPSIS

vcfannotategenotypes

DESCRIPTION

Examine genotype correspondence. Annotate genotypes in the first file with genotypes in the second adding the genotype as another flag to each sample filed in the first file. annotation-tag is the name of the sample flag which is added to store the annotation. also adds a `has_variant' flag for sites where the second file has a variant.

OPTIONS

    Type: transformation

EXIT VALUES

0   Success

not 0
    Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS
Erik Garrison and vcflib contributors.