SEGMENTIHS(1)

NAME

segmentIhs

SYNOPSIS

segmentFst -s 2 -f iHS.normalized.output.txt

DESCRIPTION

Creates genomic segments (bed file) for regions with high wcFst

OPTIONS

    Output : 8 columns :
         1. Seqid
         2. Start (zero based)
         3. End   (zero based)
         4. Average iHS
         5. Average high Fst (iHS > -s)
         6. N iHS values in segment
         7. N high iHS values in segment
         8. Segment length
    required: -f            -- Output from normalizeIHS
    optional: -s            -- High absolute iHS cutoff [2]
    Type: statistics

EXIT VALUES

0   Success

not 0
    Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS
Erik Garrison and vcflib contributors.