about:
  home: 'https://github.com/trinityrnaseq/trinityrnaseq'
  license: "https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/master/LICENSE.txt"
  summary: "Trinity assembles transcript sequences from Illumina RNA-Seq data"
build:
  number: 8
  skip: True # [osx]
package:
  name: trinity
  version: '2.1.1'
source:
  md5: 5cc37d847abc8022d588d0c36b83344f
  url: https://github.com/trinityrnaseq/trinityrnaseq/archive/v2.1.1.tar.gz
requirements:
  build:
    - perl
    - openjdk
    - trimmomatic
    - samtools
    - jellyfish
    - htslib
    - collectl
    - fastool
    - parafly
    - slclust
  run:
    - perl
    - openjdk
    - trimmomatic
    - samtools
    - jellyfish
    - htslib
    - collectl
    - fastool
    - parafly
    - slclust
test:
  commands:
    - "Trinity --cite &> /dev/null"
    - "align_and_estimate_abundance.pl --help &> /dev/null || [[ \"$?\" == 255 ]]"
    - "abundance_estimates_to_matrix.pl --help &> /dev/null || [[ \"$?\" == 255 ]]"
    - "run_DE_analysis.pl -h &> /dev/null || [[ \"$?\" == 255 ]]"
    - "PtR --help &> /dev/null || [[ \"$?\" == 255 ]]"

extra:
  identifiers:
    - biotools:trinity
