# This file created by conda-build 3.12.1
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Aug 17 13:51:07 2018
# ------------------------------------------------

package:
    name: trinity
    version: 2.8.2
source:
    patches:
        - trinseqtk.make.patch
    sha256: 1cdb8a1fe37e20486964e6df1e14063c58855dbdb57b747bdecd4e182558df23
    url: https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.8.2.tar.gz
build:
    number: '0'
    string: py36pl526hd28b015_0
requirements:
    build:
        - autoconf 2.69 pl526_7
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.8.13 ha4d7672_0
        - cmake 3.12.1 h011004d_0
        - curl 7.61.0 h93b3f91_1
        - expat 2.2.5 hfc679d8_1
        - krb5 1.14.6 0
        - libgcc-ng 7.2.0 hdf63c60_3
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libuv 1.22.0 h470a237_1
        - m4 1.4.18 0
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2o h470a237_1
        - perl 5.26.2 h470a237_0
        - rhash 1.3.4 0
        - toolchain 2.1.6 0
        - toolchain_c_linux-64 2.1.6 0
        - toolchain_cxx_linux-64 2.1.6 0
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    host:
        - boost 1.67.0 py36h3e44d54_0
        - boost-cpp 1.67.0 h3a22d5f_0
        - bowtie2 2.3.4.2 py36h2d50403_0
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.8.13 ha4d7672_0
        - certifi 2018.8.13 py36_0
        - cmake 3.12.1 h011004d_0
        - curl 7.61.0 h93b3f91_1
        - expat 2.2.5 hfc679d8_1
        - icu 58.2 hfc679d8_0
        - jellyfish 2.2.10 h2d50403_0
        - jemalloc 5.1.0 hfc679d8_0
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_4
        - libgcc 7.2.0 h69d50b8_2
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran-ng 7.2.0 hdf63c60_3
        - libopenblas 0.2.20 h9ac9557_7
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libuv 1.22.0 h470a237_1
        - ncurses 6.1 hfc679d8_1
        - numpy 1.14.3 py36h28100ab_2
        - numpy-base 1.14.3 py36h0ea5e3f_1
        - openjdk 8.0.144 zulu8.23.0.3_2
        - openssl 1.0.2o h470a237_1
        - perl 5.26.2 h470a237_0
        - pip 18.0 py36_1
        - python 3.6.6 h5001a0f_0
        - readline 7.0 haf1bffa_1
        - rhash 1.3.4 0
        - salmon 0.11.2 h445c947_0
        - samtools 1.7 1
        - setuptools 40.0.0 py36_1
        - sqlite 3.24.0 h2f33b56_0
        - tbb 2018_20171205 0
        - tk 8.6.8 0
        - wheel 0.31.1 py36_1
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bowtie2 >=2.3.0
        - jellyfish >=2.2.6
        - libgcc-ng >=4.9
        - libstdcxx-ng >=4.9
        - openjdk >=8
        - perl >=5.26.2,<5.26.3.0a0
        - python >=3.6,<3.7.0a0
        - salmon >=0.9.1
        - samtools >=1.3
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - Trinity --cite
about:
    home: https://github.com/trinityrnaseq/trinityrnaseq/
    license: BSD-3-Clause
    summary: Trinity RNA-Seq de novo transcriptome assembly
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:trinity
