@HD	VN:1.6	SO:coordinate
@SQ	SN:c1	LN:10
@CO	
@CO	Copyright (c) 2014,2018 Genome Research Ltd.
@CO	
@CO	Permission is hereby granted, free of charge, to any person obtaining
@CO	a copy of this software and associated documentation files (the
@CO	"Software"), to deal in the Software without restriction, including
@CO	without limitation the rights to use, copy, modify, merge, publish,
@CO	distribute, sublicense, and/or sell copies of the Software, and to
@CO	permit persons to whom the Software is furnished to do so, subject
@CO	to the following conditions:
@CO	
@CO	The above copyright notice and this permission notice shall be included
@CO	in all copies or substantial portions of the Software.
@CO	
@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
@CO	OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
@CO	MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
@CO	IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
@CO	CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
@CO	TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
@CO	SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
@CO	
@CO	Ref  AACCG******CGGTT
@CO	     12345      67890  Depadded base numbering
@CO	                    1
@CO	
@CO	s0a  AACCG      CGGTT  10M
@CO	s0b  AACCG      CGGTT  10M
@CO	s0c  AACCG      CGGTT  10M
@CO	s0d  AACCG      CGGTT  10M
@CO	s1   AACCGGTTAACCGGTT  5M 6I 5M
@CO	s2   AACCG*TTAA*CGGTT  5M 1P 4I 1P 5M
@CO	s3   AACCGGTT***CGGTT  5M 3I 3P 5M
@CO	s4   AACCG***AACCGGTT  5M 3P 3I 5M
@CO	s5   AACC***TA***GGTT  4M 1D 2P 2I 2P 1D 4M
@CO	s6   AA***GTTAAC***TT  2M 3D 6I 3D 2M
@CO	s7   AACC*      *GGTT  4M 2D 4M
@CO	s8   *******TA*******  5D 2P 2I 2P 5D
@CO	s9       G**TA**       1M 2P 2I 2P
@CO	
s0a	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
s0b	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
s0c	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
s0d	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
s1	0	c1	1	0	5M6I5M	*	0	0	AACCGGTTAACCGGTT	*
s2	0	c1	1	0	5M1P4I1P5M	*	0	0	AACCGTTAACGGTT	*
s3	0	c1	1	0	5M3I3P5M	*	0	0	AACCGGTTCGGTT	*
s4	0	c1	1	0	5M3P3I5M	*	0	0	AACCGAACCGGTT	*
s5	0	c1	1	0	4M1D2P2I2P1D4M	*	0	0	AACCTAGGTT	*
s6	0	c1	1	0	2M3D6I3D2M	*	0	0	AAGTTAACTT	*
s7	0	c1	1	0	4M2D4M	*	0	0	AACCGGTT	*
s8	0	c1	1	0	5D2P2I2P5D	*	0	0	TA	*
s9	0	c1	5	0	1M2P2I2P	*	0	0	GTA	*
