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opt/trinity-2.12.0/util/misc/tab_to_fastQ.pl
opt/trinity-2.12.0/util/misc/tab_to_fasta.pl
opt/trinity-2.12.0/util/misc/tblastn_wrapper.pl
opt/trinity-2.12.0/util/misc/testUnlimitStacksize.pl
opt/trinity-2.12.0/util/misc/transcript_coverage_UTR_trimmer.pl
opt/trinity-2.12.0/util/misc/transcript_fasta_to_ORF_pics.pl
opt/trinity-2.12.0/util/misc/transcript_gff3_to_bed.pl
opt/trinity-2.12.0/util/misc/transdecoder_pep_to_false_fusion_finder.pl
opt/trinity-2.12.0/util/misc/trinity_component_distribution.pl
opt/trinity-2.12.0/util/misc/trinity_trans_matrix_to_rep_trans_gene_matrix.pl
opt/trinity-2.12.0/util/retrieve_sequences_from_fasta.pl
opt/trinity-2.12.0/util/sift_bam_max_cov.pl
opt/trinity-2.12.0/util/support_scripts/ExitTester.jar
opt/trinity-2.12.0/util/support_scripts/GG_partitioned_trinity_aggregator.pl
opt/trinity-2.12.0/util/support_scripts/SAM_coordSorted_fragment_Read_coverage_writer.pl
opt/trinity-2.12.0/util/support_scripts/SAM_coordSorted_fragment_coverage_writer2.pl
opt/trinity-2.12.0/util/support_scripts/SAM_extract_properly_mapped_pairs.pl
opt/trinity-2.12.0/util/support_scripts/SAM_extract_uniquely_mapped_reads.pl
opt/trinity-2.12.0/util/support_scripts/SAM_filter_out_unmapped_reads.pl
opt/trinity-2.12.0/util/support_scripts/SAM_ordered_pair_jaccard.pl
opt/trinity-2.12.0/util/support_scripts/SAM_set_transcribed_orient_info.pl
opt/trinity-2.12.0/util/support_scripts/SAM_strand_separator.pl
opt/trinity-2.12.0/util/support_scripts/SAM_to_frag_coords.pl
opt/trinity-2.12.0/util/support_scripts/add_LR_reads_to_iworm_bundle.pl
opt/trinity-2.12.0/util/support_scripts/annotate_chrysalis_welds_with_iworm_names.pl
opt/trinity-2.12.0/util/support_scripts/batch_cmds.pl
opt/trinity-2.12.0/util/support_scripts/bowtie2_wrapper.pl
opt/trinity-2.12.0/util/support_scripts/define_SAM_coverage_partitions2.pl
opt/trinity-2.12.0/util/support_scripts/define_coverage_partitions.pl
opt/trinity-2.12.0/util/support_scripts/eXpress_trans_to_gene_results.pl
opt/trinity-2.12.0/util/support_scripts/ensure_coord_sorted_sam.pl
opt/trinity-2.12.0/util/support_scripts/extract_reads_per_partition.pl
opt/trinity-2.12.0/util/support_scripts/fastQ_to_fastA.pl
opt/trinity-2.12.0/util/support_scripts/fastQ_to_tab.pl
opt/trinity-2.12.0/util/support_scripts/fasta_find_duplicates.pl
opt/trinity-2.12.0/util/support_scripts/fasta_to_tab.pl
opt/trinity-2.12.0/util/support_scripts/filter_iworm_by_min_length_or_cov.pl
opt/trinity-2.12.0/util/support_scripts/filter_transcripts_require_min_cov.pl
opt/trinity-2.12.0/util/support_scripts/fragment_coverage_writer.pl
opt/trinity-2.12.0/util/support_scripts/get_Trinity_gene_to_trans_map.pl
opt/trinity-2.12.0/util/support_scripts/inchworm_transcript_splitter.pl
opt/trinity-2.12.0/util/support_scripts/iworm_LR_to_scaff_pairs.pl
opt/trinity-2.12.0/util/support_scripts/jaccard_fasta_clipper.pl
opt/trinity-2.12.0/util/support_scripts/jaccard_wig_clipper.pl
opt/trinity-2.12.0/util/support_scripts/join_partitions_within_range.pl
opt/trinity-2.12.0/util/support_scripts/kallisto_trans_to_gene_results.pl
opt/trinity-2.12.0/util/support_scripts/merge_pair_and_LR_scaff_links.pl
opt/trinity-2.12.0/util/support_scripts/nbkc_merge_left_right_stats.pl
opt/trinity-2.12.0/util/support_scripts/nbkc_normalize.pl
opt/trinity-2.12.0/util/support_scripts/ordered_fragment_coords_to_jaccard.pl
opt/trinity-2.12.0/util/support_scripts/outfmt6_add_percent_match_length.pl
opt/trinity-2.12.0/util/support_scripts/partition_chrysalis_graphs_n_reads.pl
opt/trinity-2.12.0/util/support_scripts/partitioned_trinity_aggregator.pl
opt/trinity-2.12.0/util/support_scripts/plugin_install_tests.sh
opt/trinity-2.12.0/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl
opt/trinity-2.12.0/util/support_scripts/print_butterfly_assemblies.pl
opt/trinity-2.12.0/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl
opt/trinity-2.12.0/util/support_scripts/revcomp_fasta.pl
opt/trinity-2.12.0/util/support_scripts/run_TMM_scale_matrix.pl
opt/trinity-2.12.0/util/support_scripts/run_UpperQuartileNormalization_matrix.pl
opt/trinity-2.12.0/util/support_scripts/salmon_runner.pl
opt/trinity-2.12.0/util/support_scripts/salmon_trans_to_gene_results.pl
opt/trinity-2.12.0/util/support_scripts/scaffold_iworm_contigs.pl
opt/trinity-2.12.0/util/support_scripts/segment_GFF_partitions.pl
opt/trinity-2.12.0/util/support_scripts/tests/sample_data_tests.py
opt/trinity-2.12.0/util/support_scripts/tests/test_prep.py
opt/trinity-2.12.0/util/support_scripts/tests/tests.py
opt/trinity-2.12.0/util/support_scripts/trinity_install_tests.sh
opt/trinity-2.12.0/util/support_scripts/trinity_installer.py
opt/trinity-2.12.0/util/support_scripts/wig_clip_to_bed.pl
opt/trinity-2.12.0/util/support_scripts/write_partitioned_trinity_cmds.pl
