bin/bam2fastx
bin/bam_merge
bin/bed_to_juncs
bin/contig_to_chr_coords
bin/fix_map_ordering
bin/gtf_juncs
bin/gtf_to_fasta
bin/juncs_db
bin/long_spanning_reads
bin/map2gtf
bin/prep_reads
bin/sam_juncs
bin/samtools_0.1.18
bin/segment_juncs
bin/sra_to_solid
bin/tophat
bin/tophat-fusion-post
bin/tophat2
bin/tophat_reports
