INSTALL
MANIFEST.in
README
setup.cfg
setup.py
sv2/Annotation.py
sv2/Bam.py
sv2/FeatureExtraction.c
sv2/FeatureExtraction.pyx
sv2/Genotype.c
sv2/Genotype.pyx
sv2/Merge.py
sv2/Output.py
sv2/Ped.py
sv2/Preprocess.c
sv2/Preprocess.pyx
sv2/SV.py
sv2/Snv.c
sv2/Snv.pyx
sv2/Svm.c
sv2/Svm.pyx
sv2/Variant.py
sv2/Vcf.py
sv2/__init__.py
sv2/sv2
sv2/sv2.py
sv2/sv2Config.py
sv2/sv2_backend.py
sv2/sv2_train.py
sv2/sv2train
sv2.egg-info/PKG-INFO
sv2.egg-info/SOURCES.txt
sv2.egg-info/dependency_links.txt
sv2.egg-info/requires.txt
sv2.egg-info/top_level.txt
sv2/config/sv2.ini
sv2/config/sv2_clf.json
sv2/resources/GC_content_reference.txt
sv2/resources/training_sets/1kgp_highcov_del_gt1kb_svm_clf.pkl
sv2/resources/training_sets/1kgp_highcov_del_lt1kb_svm_clf.pkl
sv2/resources/training_sets/1kgp_highcov_del_malesexchrom_svm_clf.pkl
sv2/resources/training_sets/1kgp_highcov_dup_har_svm_clf.pkl
sv2/resources/training_sets/1kgp_lowcov_dup_breakpoint_svm_clf.pkl
sv2/resources/training_sets/1kgp_lowcov_dup_malesexchrom_svm_clf.pkl
sv2/training/README
sv2/training/sv2_training.ipynb
sv2/training/1kgp_training_data/1kgp_highcov_del_gt1kb.txt
sv2/training/1kgp_training_data/1kgp_highcov_del_lt1kb.txt
sv2/training/1kgp_training_data/1kgp_highcov_del_malesexchrom.txt
sv2/training/1kgp_training_data/1kgp_highcov_dup_har.txt
sv2/training/1kgp_training_data/1kgp_lowcov_dup_breakpoint.txt
sv2/training/1kgp_training_data/1kgp_lowcov_dup_malesexchrom.txt