/home/aphillip/web/mummer/examples/data/D_melanogaster_2Rslice.fasta /home/aphillip/web/mummer/examples/data/D_pseudoobscura_contigs.fasta

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-- Alignments between D_melanogaster_2Rslice and 3214968

-- BEGIN alignment [ -3 26049 - 25810 | +3 84 - 323 ]


26049      KEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGF
           KEKSTE VLE LQ QI+ LEKYMINT+ERKR FVTNF+G TIGAYIVGF
84         KEKSTEEVLEALQVQIKDLEKYMINTQERKRSFVTNFLGITIGAYIVGF

25902      GLWWYFYFPPTMQECFMYLVPLLLFPIV*VL
           GLW  FYFPPT +E  +YLVPLLLFP++ V 
231        GLWCCFYFPPTWKERIVYLVPLLLFPVIIVF


--   END alignment [ -3 26049 - 25810 | +3 84 - 323 ]
-- BEGIN alignment [ -2 25750 - 25604 | +3 315 - 461 ]


25750      IIFLRRLFTWYFQRKLNKNGDKLTRLKEDKRKILEQVMDKETYKVGSQL
           I+F+R++FTWYFQRKLNKNGDKL +LKE K+KILEQVMDKETYKV   L
315        IVFMRQMFTWYFQRKLNKNGDKLAQLKEKKKKILEQVMDKETYKVAVNL


--   END alignment [ -2 25750 - 25604 | +3 315 - 461 ]
-- BEGIN alignment [ -1 25358 - 24888 | +3 444 - 845 ]


25358      QVAVNLLERFGDKKQLRISGLPTGSTPNRPQVERSPLTVAAVARTSSAG
           +VAVNLLERFGD+K   ++   + S   +PQ  R+P   A +       
444        KVAVNLLERFGDRK...LNQSFSRSPAMQPQ..RTPQPAARLP......

25211      GQQQQQRSLAPYTSVYRNNNNNQNTSLNSSVISTHSLGQMTSASPQLRA
           G   QQR L PY SVYRN NNN   +LNSS  S      MTSASP + A
558        GASTQQRLLTPYRSVYRNVNNN...NLNSSTQS......MTSASPNVGA

25064      VQELRRRSPFPIVD.DRSRSAIDRIVDFIVGDSPKDRFGMICKACHAHN
           VQELRRR+PFP+VD +RSRSA+DRIVDFIVGD+P  R+GMICK C  HN
678        VQELRRRTPFPVVDQNRSRSAVDRIVDFIVGDTP.IRYGMICKECDGHN

24920      GGL*LLKENFY
           G   +L E+ Y
822        G...MLPEDEY


--   END alignment [ -1 25358 - 24888 | +3 444 - 845 ]
-- BEGIN alignment [ -1 24617 - 24462 | +3 843 - 1001 ]


24617      YEYTTFRCAFCNVLNPARKKRPVAPRLSLEAPSDTANKRNDSSESESSD
           Y +T+FRCAFCN LNPARKKRPVAPRLSL   +  +N R DSS S+SSD
843        YVFTSFRCAFCNALNPARKKRPVAPRLSLNQQTPPSNNRIDSSGSDSSD

24470      D.DS
           D DS
990        DYDS


--   END alignment [ -1 24617 - 24462 | +3 843 - 1001 ]
-- BEGIN alignment [ +3 25617 - 25787 | -2 448 - 278 ]


25617      TL*VSLSMTCSNILRLSSFRRVSLSPFLLSLRWKYHVNSRRRKMMLEPG
           TL*VSLSMTCSNI    SF   SLSPFLLSLR KYHVN  R K M+   
448        TL*VSLSMTCSNIFFFFSFSWASLSPFLLSLR*KYHVNICRMKTMITGN

25764      REKGGSGT
           R  G   T
301        RSSGTKYT


--   END alignment [ +3 25617 - 25787 | -2 448 - 278 ]

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