# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Nov  5 09:11:02 2024
# ------------------------------------------------

package:
  name: snapatac2
  version: 2.7.1
source:
  patches:
    - cargo.toml.patch
    - pyproject.toml.patch
  sha256: 18c206153112fbf9ca97c690d6d8d1e51cb5d125739ead6e8a3aece8f01cbd66
  url: https://github.com/kaizhang/SnapATAC2/archive/refs/tags/v2.7.1.tar.gz
build:
  number: '0'
  run_exports:
    - snapatac2 >=2.7.1,<3.0a0
  string: py312h57b33c0_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.32.3 h4bc722e_0
    - ca-certificates 2024.8.30 hbcca054_0
    - cmake 3.30.5 hf9cb763_0
    - gcc_impl_linux-64 12.4.0 hb2e57f8_1
    - gcc_linux-64 12.4.0 h6b7512a_5
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libcurl 8.10.1 hbbe4b11_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.6.3 h5888daf_0
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 12.4.0 ha4f9413_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - libnghttp2 1.64.0 h161d5f1_0
    - libsanitizer 12.4.0 h46f95d5_1
    - libssh2 1.11.0 h0841786_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-ng 14.2.0 h4852527_1
    - libuv 1.49.2 hb9d3cd8_0
    - libzlib 1.3.1 hb9d3cd8_2
    - make 4.4.1 hb9d3cd8_2
    - ncurses 6.5 he02047a_1
    - openssl 3.3.2 hb9d3cd8_0
    - rhash 1.4.5 hb9d3cd8_0
    - rust 1.81.0 h1a8d7c4_0
    - rust-std-x86_64-unknown-linux-gnu 1.81.0 h2c6d0dc_0
    - rust_linux-64 1.81.0 h69090a9_0
    - sysroot_linux-64 2.17 h4a8ded7_18
    - tzdata 2024b hc8b5060_0
    - xz 5.2.6 h166bdaf_0
    - zstd 1.5.6 ha6fb4c9_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - ca-certificates 2024.8.30 hbcca054_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libexpat 2.6.3 h5888daf_0
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.46.0 hde9e2c9_0
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.2.13 h4ab18f5_6
    - maturin 1.7.4 py312h6ab59e4_0
    - ncurses 6.5 he02047a_1
    - openssl 3.3.2 hb9d3cd8_0
    - pip 24.3.1 pyh8b19718_0
    - python 3.12.3 hab00c5b_0_cpython
    - python_abi 3.12 5_cp312
    - readline 8.2 h8228510_1
    - setuptools 75.3.0 pyhd8ed1ab_0
    - tk 8.6.13 noxft_h4845f30_101
    - tomli 2.0.2 pyhd8ed1ab_0
    - tzdata 2024b hc8b5060_0
    - wheel 0.44.0 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h4ab18f5_6
  run:
    - anndata
    - libgcc >=12
    - libzlib >=1.2.13,<2.0a0
    - macs3
    - multiprocess
    - natsort
    - numpy >=1.16.0
    - pandas >=1.0,<2.1.2
    - plotly >=5.19.0
    - polars >=1.0
    - pooch >=1.6.0
    - pyarrow
    - pyfaidx >=0.7.0,<0.8.0
    - python >=3.12,<3.13.0a0
    - python-igraph >=0.10.3
    - python-kaleido
    - python_abi 3.12.* *_cp312
    - rustworkx
    - scikit-learn >=1.0
    - scipy >=1.4
    - tqdm >=4.62
    - typeguard >=4.0
    - typing_extensions
  run_constrained:
    - __glibc >=2.17
test:
  imports:
    - snapatac2
about:
  dev_url: https://github.com/kaizhang/SnapATAC2
  doc_url: https://kzhang.org/SnapATAC2
  home: https://github.com/kaizhang/SnapATAC2
  license: MIT
  license_family: MIT
  license_file: snapatac2-python/LICENSE
  summary: 'SnapATAC2: Single-cell epigenomics analysis pipeline.'
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:snapatac
    - doi:10.1038/s41592-023-02139-9
    - usegalaxy-eu:snapatac2_clustering
    - usegalaxy-eu:snapatac2_peaks_and_motif
    - usegalaxy-eu:snapatac2_plotting
    - usegalaxy-eu:snapatac2_preprocessing
