# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Aug 27 20:51:59 2019
# ------------------------------------------------

package:
    name: sepp
    version: 4.3.10
source:
    -   patches:
            - nodeps.setup.py.patch
            - relocate.run-sepp.sh.patch
            - relocate.sepp.config.patch
        sha256: 24d8d410138563017e6f2f1263d5e34427f5bbddb875b72a036f7c879cef203b
        url: https://github.com/smirarab/sepp/archive/4.3.10.tar.gz
build:
    number: '0'
    string: py27_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - alsa-lib 1.1.5 h516909a_1001
        - ca-certificates 2019.6.16 hecc5488_0
        - certifi 2019.6.16 py27_1
        - dendropy 4.4.0 py_1
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - giflib 5.1.7 h516909a_1
        - hmmer 3.1b2 3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - lcms2 2.9 h2e4bb80_0
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libiconv 1.15 h516909a_1005
        - libpng 1.6.37 hed695b0_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 h57b8799_1003
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.9 hee79883_5
        - lz4-c 1.8.3 he1b5a44_1001
        - ncurses 6.1 hf484d3e_1002
        - openjdk 11.0.1 h46a85a0_1017
        - openssl 1.1.1c h516909a_0
        - pip 19.2.3 py27_0
        - pthread-stubs 0.4 h14c3975_1001
        - python 2.7.15 h5a48372_1009
        - readline 8.0 hf8c457e_0
        - setuptools 41.2.0 py27_0
        - sqlite 3.29.0 hcee41ef_0
        - tk 8.6.9 hed695b0_1002
        - wheel 0.33.6 py27_0
        - xorg-fixesproto 5.0 h14c3975_1002
        - xorg-inputproto 2.3.2 h14c3975_1002
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libx11 1.6.8 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxfixes 5.0.3 h516909a_1004
        - xorg-libxi 1.7.10 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-libxtst 1.2.3 h14c3975_1002
        - xorg-recordproto 1.14.2 h14c3975_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1005
        - zstd 1.4.0 h3b9ef0a_0
    run:
        - dendropy
        - hmmer ==3.1b2
        - openjdk
        - python >=2.7,<2.8.0a0
test:
    commands:
        - run_sepp.py --help
        - run-sepp.sh $PREFIX/share/sepp/ref/input_fragments.fasta testrun_tiny -a
            $PREFIX/share/sepp/ref/reference_alignment_tiny.fasta -t $PREFIX/share/sepp/ref/reference_phylogeny_tiny.nwk
            -r $PREFIX/share/sepp/ref/RAxML_info-reference-gg-raxml-bl.info -x 1 -b
            1
        - grep "f__Halomonadaceae" testrun_tiny_placement.tog.relabelled.tre
        - grep "testseqd" testrun_tiny_placement.tog.relabelled.tre
about:
    home: https://github.com/smirarab/sepp
    license: GPLv3
    license_family: GPL3
    license_file: LICENSE
    summary: SATe-enabled phylogenetic placement
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:sepp
    skip-lints:
        - should_be_noarch_generic
