.coveragerc
CHANGELOG.md
CONTRIBUTING.md
COPYING.txt
MANIFEST.in
Makefile
README.rst
RELEASE.md
asv.conf.json
checklist.py
setup.cfg
setup.py
assets/.no.gif
assets/horizontal_powered_by.png
assets/horizontal_powered_by.svg
assets/logo-inverted.svg
assets/logo.png
assets/logo.svg
assets/logo_and_powered.pdf
assets/vertical_powered_by.png
assets/vertical_powered_by.svg
benchmarks/__init__.py
benchmarks/benchmarks.py
ci/conda_requirements.txt
ci/pip_requirements.txt
doc/Makefile
doc/README.md
doc/source/alignment.rst
doc/source/conf.py
doc/source/diversity.rst
doc/source/index.rst
doc/source/io.rst
doc/source/sequence.rst
doc/source/stats.rst
doc/source/tree.rst
doc/source/util.rst
doc/source/workflow.rst
doc/source/_static/copybutton.js
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doc/source/_templates/layout.html
doc/source/_templates/autosummary/attribute.rst
doc/source/_templates/autosummary/class.rst
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ipynbs/presentations/2014.05.13-jairideout/README.md
ipynbs/presentations/2014.05.13-jairideout/dm.txt
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ipynbs/presentations/2014.05.13-jairideout/smalldm.txt
ipynbs/presentations/2014.05.13-jairideout/style.css
ipynbs/presentations/2014.05.13-jairideout/talktools.py
ipynbs/presentations/2014.07.09-gregcaporaso/caporaso-scipy2014.ipynb
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ipynbs/presentations/2014.07.09-gregcaporaso/logo.png
ipynbs/presentations/2014.07.09-gregcaporaso/qiime-cites.png
ipynbs/presentations/2014.07.09-gregcaporaso/skbio-alignment-docs.png
ipynbs/presentations/2014.07.09-gregcaporaso/skbio-bdiv-docs.png
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licenses/fastq-example-files-readme.txt
licenses/flask.txt
licenses/ipython.txt
licenses/nb-slideshow-template.txt
licenses/python.txt
licenses/qiita.txt
licenses/scikit-learn.txt
licenses/scipy.txt
licenses/sphinx-bootstrap-theme.txt
licenses/ssw.txt
licenses/verman.txt
scikit_bio.egg-info/PKG-INFO
scikit_bio.egg-info/SOURCES.txt
scikit_bio.egg-info/dependency_links.txt
scikit_bio.egg-info/requires.txt
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skbio/_base.py
skbio/test.py
skbio/workflow.py
skbio/alignment/__init__.py
skbio/alignment/_indexing.py
skbio/alignment/_pairwise.py
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skbio/io/format/clustal.py
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skbio/io/format/fastq.py
skbio/io/format/genbank.py
skbio/io/format/lsmat.py
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skbio/io/format/qseq.py
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