# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Sep  7 02:16:35 2019
# ------------------------------------------------

package:
    name: rgi
    version: 5.1.0
source:
    -   sha256: 806ac75c38170b688222d264391e685b96a08bc77278ff9130be3797b56de2e9
        url: https://github.com/arpcard/rgi/archive/5.1.0.tar.gz
    -   folder: card-data
        sha256: 98d336e11bd84e2253c76b32d1f9371b0560c82053f4ce3cc17e91d1ca203c98
        url: https://card.mcmaster.ca/download/0/broadstreet-v3.0.4.tar.gz
build:
    number: '0'
    string: py36hed695b0_0
requirements:
    build:
        - _libgcc_mutex 0.1 main
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_8
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_8
        - libgcc-ng 9.1.0 hdf63c60_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
    host:
        - _libgcc_mutex 0.1 main
        - atomicwrites 1.3.0 py_0
        - attrs 19.1.0 py_0
        - biopython 1.72 py36h14c3975_1000
        - blast 2.6.0 boost1.64_2
        - boost 1.64.0 py36_4
        - boost-cpp 1.64.0 1
        - bzip2 1.0.8 h516909a_0
        - ca-certificates 2019.6.16 hecc5488_0
        - certifi 2019.6.16 py36_1
        - cycler 0.10.0 py_1
        - dbus 1.13.6 he372182_0
        - diamond 0.8.36 hdbcaa40_3
        - expat 2.2.5 he1b5a44_1003
        - filetype 1.0.5 py_0
        - fontconfig 2.13.1 he4413a7_1000
        - freetype 2.10.0 he983fc9_1
        - gettext 0.19.8.1 hc5be6a0_1002
        - glib 2.58.3 h6f030ca_1002
        - gst-plugins-base 1.14.5 h0935bb2_0
        - gstreamer 1.14.5 h36ae1b5_0
        - icu 58.2 hf484d3e_1000
        - importlib_metadata 0.20 py36_0
        - jpeg 9c h14c3975_1001
        - kiwisolver 1.1.0 py36hc9558a2_0
        - libblas 3.8.0 12_openblas
        - libcblas 3.8.0 12_openblas
        - libffi 3.2.1 he1b5a44_1006
        - libgcc 7.2.0 h69d50b8_2
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_0
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 12_openblas
        - libopenblas 0.3.7 h6e990d7_1
        - libpng 1.6.37 hed695b0_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.9 h13577e0_2
        - matplotlib 3.1.1 py36_0
        - matplotlib-base 3.1.1 py36hfd891ef_0
        - mock 3.0.5 py36_0
        - more-itertools 7.2.0 py_0
        - ncurses 6.1 hf484d3e_1002
        - numpy 1.17.1 py36h95a1406_0
        - openssl 1.1.1c h516909a_0
        - packaging 19.0 py_0
        - pandas 0.25.1 py36hb3f55d8_0
        - patsy 0.5.1 py_0
        - pcre 8.41 hf484d3e_1003
        - pip 19.2.3 py36_0
        - pluggy 0.12.0 py_0
        - prodigal 2.6.3 1
        - pthread-stubs 0.4 h14c3975_1001
        - py 1.8.0 py_0
        - pyahocorasick 1.4.0 py36h14c3975_0
        - pyfaidx 0.5.5.2 py_1
        - pyparsing 2.4.2 py_0
        - pyqt 5.9.2 py36hcca6a23_3
        - pytest 5.0.1 py36_0
        - python 3.6.7 h357f687_1005
        - python-dateutil 2.8.0 py_0
        - pytz 2019.2 py_0
        - qt 5.9.7 h52cfd70_2
        - readline 8.0 hf8c457e_0
        - scipy 1.3.1 py36h921218d_2
        - seaborn 0.9.0 py_1
        - setuptools 41.2.0 py36_0
        - sip 4.19.8 py36hf484d3e_1000
        - six 1.12.0 py36_1000
        - sqlite 3.29.0 hcee41ef_1
        - statsmodels 0.10.1 py36hc1659b7_0
        - tk 8.6.9 hed695b0_1002
        - tornado 6.0.3 py36h516909a_0
        - wcwidth 0.1.7 py_1
        - wheel 0.33.6 py36_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xz 5.2.4 h14c3975_1001
        - zipp 0.6.0 py_0
        - zlib 1.2.11 h516909a_1005
    run:
        - bamtools >=2.5.1
        - bedtools >=2.28.0
        - biopython ==1.72
        - blast ==2.6.0
        - bowtie2 >=2.3.4.3
        - bwa >=0.7.17
        - diamond ==0.8.36
        - filetype >=1.0.0
        - libgcc-ng >=7.3.0
        - matplotlib >=2.1.2
        - mock >=2.0.0
        - pandas >=0.15.0
        - prodigal ==2.6.3
        - pyahocorasick >=1.1.7
        - pyfaidx >=0.5.4.1
        - pytest >=3.0.0
        - python >=3.6,<3.7.0a0
        - samtools >=1.9
        - seaborn >=0.8.1
        - six >=1.7.0
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - rgi database -v | grep "3.0.4"
        - rgi load -h
        - rgi main -h
        - rgi tab -h
        - rgi parser -h
        - rgi clean -h
        - rgi galaxy -h
        - rgi bwt -h
        - rgi kmer_build -h
        - rgi kmer_query -h
about:
    home: https://card.mcmaster.ca
    license: https://card.mcmaster.ca/about
    license_file: LICENSE
    summary: This tool provides a preliminary annotation of your DNA sequence(s) based
        upon the data available in The Comprehensive Antibiotic Resistance Database
        (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will
        be highlighted. As CARD expands to include more pathogens, genomes, plasmids,
        and ontology terms this tool will grow increasingly powerful in providing
        first-pass detection of antibiotic resistance associated genes. See license
        at CARD website
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - doi:10.1093/nar/gkw1004
