WGCNA-package	WGCNA-package
accuracyMeasures	accuracyMeasures
addErrorBars	addErrorBars
addGrid	addGrid
addGuideLines	addGuideLines
addTraitToMEs	addTraitToMEs
adjacency	adjacency
adjacency.fromSimilarity	adjacency
adjacency.polyReg	adjacency.polyReg
adjacency.splineReg	adjacency.splineReg
AFcorMI	AFcorMI
alignExpr	alignExpr
allocateJobs	allocateJobs
allowWGCNAThreads	allowWGCNAThreads
automaticNetworkScreening	automaticNetworkScreening
automaticNetworkScreeningGS	automaticNetworkScreeningGS
bicor	bicor
bicorAndPvalue	bicorAndPvalue
bicovWeights	bicovWeights
blockSize	blockSize
blockwiseConsensusModules	blockwiseConsensusModules
blockwiseIndividualTOMs	blockwiseIndividualTOMs
blockwiseModules	blockwiseModules
BloodLists	BloodLists
blueWhiteRed	blueWhiteRed
BrainLists	BrainLists
BrainRegionMarkers	BrainRegionMarkers
branchEigengeneDissim	branchEigengeneDissim
branchSplit	branchSplit
branchSplit.dissim	branchSplit.dissim
branchSplitFromStabilityLabels	branchSplitFromStabilityLabels
checkAdjMat	checkAdjMat
checkSets	checkSets
checkSimilarity	checkAdjMat
chooseOneHubInEachModule	chooseOneHubInEachModule
chooseTopHubInEachModule	chooseTopHubInEachModule
clusterCoef	clusterCoef
coClustering	coClustering
coClustering.permutationTest	coClustering.permutationTest
collapseRows	collapseRows
collapseRowsUsingKME	collapseRowsUsingKME
collectGarbage	collectGarbage
colQuantileC	colQuantileC
conformityBasedNetworkConcepts	conformityBasedNetworkConcepts
conformityDecomposition	conformityDecomposition
consensusDissTOMandTree	consensusDissTOMandTree
consensusKME	consensusKME
consensusMEDissimilarity	consensusMEDissimilarity
consensusOrderMEs	consensusOrderMEs
consensusProjectiveKMeans	consensusProjectiveKMeans
consensusRepresentatives	consensusRepresentatives
consensusTOM	consensusTOM
cor	cor
cor1	cor
corAndPvalue	corAndPvalue
corFast	cor
corPredictionSuccess	corPredictionSuccess
corPvalueFisher	corPvalueFisher
corPvalueStudent	corPvalueStudent
correlationPreservation	correlationPreservation
coxRegressionResiduals	coxRegressionResiduals
cutreeStatic	cutreeStatic
cutreeStaticColor	cutreeStaticColor
disableWGCNAThreads	allowWGCNAThreads
displayColors	displayColors
dynamicMergeCut	dynamicMergeCut
empiricalBayesLM	empiricalBayesLM
enableWGCNAThreads	allowWGCNAThreads
exportNetworkToCytoscape	exportNetworkToCytoscape
exportNetworkToVisANT	exportNetworkToVisANT
fixDataStructure	fixDataStructure
formatLabels	formatLabels
fundamentalNetworkConcepts	fundamentalNetworkConcepts
GOenrichmentAnalysis	GOenrichmentAnalysis
goodGenes	goodGenes
goodGenesMS	goodGenesMS
goodSamples	goodSamples
goodSamplesGenes	goodSamplesGenes
goodSamplesGenesMS	goodSamplesGenesMS
goodSamplesMS	goodSamplesMS
greenBlackRed	greenBlackRed
greenWhiteRed	greenWhiteRed
GTOMdist	GTOMdist
hubGeneSignificance	hubGeneSignificance
ImmunePathwayLists	ImmunePathwayLists
initProgInd	initProgInd
intramodularConnectivity	intramodularConnectivity
intramodularConnectivity.fromExpr	intramodularConnectivity
isMultiData	isMultiData
keepCommonProbes	keepCommonProbes
kMEcomparisonScatterplot	kMEcomparisonScatterplot
labeledBarplot	labeledBarplot
labeledHeatmap	labeledHeatmap
labeledHeatmap.multiPage	labeledHeatmap.multiPage
labelPoints	labelPoints
labels2colors	labels2colors
list2multiData	list2multiData
lowerTri2matrix	lowerTri2matrix
matchLabels	matchLabels
matrixToNetwork	matrixToNetwork
mergeCloseModules	mergeCloseModules
metaAnalysis	metaAnalysis
metaZfunction	metaZfunction
moduleColor.getMEprefix	moduleColor.getMEprefix
moduleEigengenes	moduleEigengenes
moduleMergeUsingKME	moduleMergeUsingKME
moduleNumber	moduleNumber
modulePreservation	modulePreservation
mtd.apply	mtd.apply
mtd.applyToSubset	mtd.apply
mtd.branchEigengeneDissim	branchEigengeneDissim
mtd.colnames	mtd.setColnames
mtd.mapply	mtd.mapply
mtd.rbindSelf	mtd.rbindSelf
mtd.setAttr	mtd.setAttr
mtd.setColnames	mtd.setColnames
mtd.simplify	mtd.simplify
mtd.subset	mtd.subset
multiData	multiData
multiData.eigengeneSignificance	multiData.eigengeneSignificance
multiData2list	list2multiData
multiIntersect	multiUnion
multiSetMEs	multiSetMEs
multiUnion	multiUnion
mutualInfoAdjacency	mutualInfoAdjacency
nearestCentroidPredictor	nearestCentroidPredictor
nearestNeighborConnectivity	nearestNeighborConnectivity
nearestNeighborConnectivityMS	nearestNeighborConnectivityMS
networkConcepts	networkConcepts
networkScreening	networkScreening
networkScreeningGS	networkScreeningGS
normalizeLabels	normalizeLabels
nPresent	nPresent
nSets	nSets
numbers2colors	numbers2colors
orderBranchesUsingHubGenes	orderBranchesUsingHubGenes
orderMEs	orderMEs
overlapTable	overlapTable
overlapTableUsingKME	overlapTableUsingKME
pickHardThreshold	pickHardThreshold
pickHardThreshold.fromSimilarity	pickHardThreshold
pickSoftThreshold	pickSoftThreshold
pickSoftThreshold.fromSimilarity	pickSoftThreshold
plotClusterTreeSamples	plotClusterTreeSamples
plotColorUnderTree	plotColorUnderTree
plotCor	plotCor
plotDendroAndColors	plotDendroAndColors
plotEigengeneNetworks	plotEigengeneNetworks
plotMat	plotMat
plotMEpairs	plotMEpairs
plotModuleSignificance	plotModuleSignificance
plotNetworkHeatmap	plotNetworkHeatmap
plotOrderedColors	plotColorUnderTree
pmean	pquantile
pmedian	pquantile
populationMeansInAdmixture	populationMeansInAdmixture
pquantile	pquantile
prepComma	prepComma
prependZeros	prependZeros
preservationNetworkConnectivity	preservationNetworkConnectivity
projectiveKMeans	projectiveKMeans
proportionsInAdmixture	proportionsInAdmixture
propVarExplained	propVarExplained
PWLists	PWLists
qvalue	qvalue
qvalue.restricted	qvalue.restricted
randIndex	randIndex
rankPvalue	rankPvalue
recutBlockwiseTrees	recutBlockwiseTrees
recutConsensusTrees	recutConsensusTrees
redWhiteGreen	redWhiteGreen
reflectBranch	swapTwoBranches
relativeCorPredictionSuccess	relativeCorPredictionSuccess
removeGreyME	removeGreyME
removePrincipalComponents	removePrincipalComponents
returnGeneSetsAsList	returnGeneSetsAsList
rgcolors.func	rgcolors.func
rowQuantileC	colQuantileC
scaleFreeFitIndex	scaleFreeFitIndex
scaleFreePlot	scaleFreePlot
SCsLists	SCsLists
selectBranch	swapTwoBranches
selectFewestConsensusMissing	selectFewestConsensusMissing
setCorrelationPreservation	setCorrelationPreservation
shortenStrings	shortenStrings
sigmoidAdjacencyFunction	sigmoidAdjacencyFunction
signedKME	signedKME
signumAdjacencyFunction	signumAdjacencyFunction
simulateDatExpr	simulateDatExpr
simulateDatExpr5Modules	simulateDatExpr5Modules
simulateEigengeneNetwork	simulateEigengeneNetwork
simulateModule	simulateModule
simulateMultiExpr	simulateMultiExpr
simulateSmallLayer	simulateSmallLayer
sizeGrWindow	sizeGrWindow
softConnectivity	softConnectivity
softConnectivity.fromSimilarity	softConnectivity
spaste	spaste
standardColors	standardColors
standardScreeningBinaryTrait	standardScreeningBinaryTrait
standardScreeningCensoredTime	standardScreeningCensoredTime
standardScreeningNumericTrait	standardScreeningNumericTrait
stdErr	stdErr
stratifiedBarplot	stratifiedBarplot
subsetTOM	subsetTOM
swapTwoBranches	swapTwoBranches
TOMdist	TOMsimilarity
TOMplot	TOMplot
TOMsimilarity	TOMsimilarity
TOMsimilarityFromExpr	TOMsimilarityFromExpr
transposeBigData	transposeBigData
TrueTrait	TrueTrait
unsignedAdjacency	unsignedAdjacency
updateProgInd	initProgInd
userListEnrichment	userListEnrichment
vectorizeMatrix	vectorizeMatrix
vectorTOM	vectorTOM
verboseBarplot	verboseBarplot
verboseBoxplot	verboseBoxplot
verboseIplot	verboseIplot
verboseScatterplot	verboseScatterplot
votingLinearPredictor	votingLinearPredictor
WGCNA	WGCNA-package
WGCNAnThreads	allowWGCNAThreads
