all_names               Return names of data in 'taxonomy()' or
                        'taxmap()'
arrange_obs             Sort user data in 'taxmap()' objects
arrange_taxa            Sort the edge list of 'taxmap()' objects
branches                Get "branch" taxa
classifications         Get classifications of taxa
database_list           Database list
ex_hierarchies          An example hierarchies object
ex_hierarchy1           An example Hierarchy object
ex_hierarchy2           An example Hierarchy object
ex_hierarchy3           An example Hierarchy object
ex_taxmap               An example taxmap object
ex_taxonomy             An example Taxonomy object
extract_tax_data        Extracts taxonomy info from vectors with regex
filter_obs              Filter observations with a list of conditions
filter_taxa             Filter taxa with a list of conditions
filtering-helpers       Taxonomic filtering helpers
get_data                Get data in a taxmap object by name
get_data_frame          Get data in a taxonomy or taxmap object by name
get_dataset             Get a data set from a taxmap object
hierarchies             Make a set of many 'hierarchy()' class objects
hierarchy               The Hierarchy class
highlight_taxon_ids     Highlight taxon ID column
id_classifications      Get ID classifications of taxa
internodes              Get "internode" taxa
is_branch               Test if taxa are branches
is_internode            Test if taxa are "internodes"
is_leaf                 Test if taxa are leaves
is_root                 Test if taxa are roots
is_stem                 Test if taxa are stems
leaves                  Get leaf taxa
leaves_apply            Apply function to leaves of each taxon
lookup_tax_data         Convert one or more data sets to taxmap
map_data                Create a mapping between two variables
map_data_               Create a mapping without NSE
mutate_obs              Add columns to 'taxmap()' objects
n_leaves                Get number of leaves
n_leaves_1              Get number of leaves
n_obs                   Count observations in 'taxmap()'
n_obs_1                 Count observation assigned in 'taxmap()'
n_subtaxa               Get number of subtaxa
n_subtaxa_1             Get number of subtaxa
n_supertaxa             Get number of supertaxa
n_supertaxa_1           Get number of supertaxa
obs                     Get data indexes associated with taxa
obs_apply               Apply function to observations per taxon
parse_dataset           Parse options specifying datasets
parse_tax_data          Convert one or more data sets to taxmap
pick                    Pick taxa
pop                     Pop taxa out
print_tree              Print a text tree
ranks_ref               Lookup-table for IDs of taxonomic ranks
remove_redundant_names
                        Remove redundant parts of taxon names
replace_taxon_ids       Replace taxon ids
roots                   Get root taxa
sample_frac_obs         Sample a proportion of observations from
                        'taxmap()'
sample_frac_taxa        Sample a proportion of taxa from 'taxonomy()'
                        or 'taxmap()'
sample_n_obs            Sample n observations from 'taxmap()'
sample_n_taxa           Sample n taxa from 'taxonomy()' or 'taxmap()'
select_obs              Subset columns in a 'taxmap()' object
span                    Span taxa
stems                   Get stem taxa
subtaxa                 Get subtaxa
subtaxa_apply           Apply function to subtaxa of each taxon
supertaxa               Get all supertaxa of a taxon
supertaxa_apply         Apply function to supertaxa of each taxon
taxa                    A class for multiple taxon objects
taxa-package            taxa
taxmap                  Taxmap class
taxon                   Taxon class
taxon_database          Taxonomy database class
taxon_id                Taxon ID class
taxon_ids               Get taxon IDs
taxon_indexes           Get taxon indexes
taxon_name              Taxon name class
taxon_names             Get taxon names
taxon_rank              Taxon rank class
taxon_ranks             Get taxon ranks
taxonomy                Taxonomy class
taxonomy_table          Convert taxonomy info to a table
transmute_obs           Replace columns in 'taxmap()' objects
